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. 2020 Nov 19;11:596027. doi: 10.3389/fmicb.2020.596027

TABLE 2.

Different panels for CRC screening.

Name Sensitivity% Specificity% AUC Technique Algorithm Sample Case Region References
Fn, Pa, Pm 89.4 93.0 0.950 qPCR LR Feces 390 China Wong et al., 2017a
Ps/EUB, Bf/EUB, Bt/EUB 80.0 90.0 0.837 qPCR LR Feces 333 Spain Malagón et al., 2019
pks, Fn 89.7 61.0 NA qPCR DA Feces 238 Sweden Eklöf et al., 2017
Fn/Fp 95.0 71.3 0.914 qPCR AR Feces 549 China Rezasoltani et al., 2018
Fn/Bb 84.6 92.3 0.911 qPCR AR Feces 549 China Rezasoltani et al., 2018
Fn/Fp, Fn/Bb 80.8 85.6 0.910 qPCR AR Feces 549 China Rezasoltani et al., 2018
Fn, Fp, Bb 92.5 83.5 0.943 qPCR AR Feces 549 China Rezasoltani et al., 2018
5 OTUs 90.0 80.0 0.896 16SrDNA LR Feces 90 America Zackular et al., 2014
6 OTUs 90.0 83.0 0.922 16SrDNA LR Feces 90 America Zackular et al., 2014
22OTUs 81.2 97.1 0.673 16SrDNA RF Feces 490 Canada, United States Baxter et al., 2016b
34 OTUs 51.7 97.1 0.847 16SrDNA RF Feces 490 Canada, United States Baxter et al., 2016b
23 OTUs 70.0 92.8 0.829 16SrDNA RF Feces 490 Canada, United States Baxter et al., 2016b
16 OTUs 53.0 96.0 0.900 16SrDNA RF Oral swabs 60 Ireland Flemer et al., 2018
28 OTUs (16 oral swabs, 12 feces) 74.0 94.0 0.940 16SrDNA RF Feces and oral swabs 60 Ireland Flemer et al., 2018
63 OTUs (29 oral swabs, 34 feces) 88.0 94.0 0.980 16SrDNA RF Feces and oral swabs 60 Ireland Flemer et al., 2018
22 OTUs 58.0 92.0 0.840 Metagenomics LR Feces 156 France, Germany Zeller et al., 2014
7 OTUs 87.0 83.7 0.886 Metagenomics RF Feces 128 China Yu et al., 2017a
15 MLGs NA NA 0.983 Metagenomics RF Feces 96 Austria Feng et al., 2015
16 OTUs NA NA 0.860 Metagenomics RF Feces 969 Meta Thomas et al., 2019a
17 OTUs 60.1 84.8 0.804 Metagenomics RF Feces 424 Meta Shah et al., 2018
30 OTUs NA NA 0.830 Metagenomics RF Feces 208 Meta Yachida et al., 2019
8 taxa NA NA 0.750 16SrDNA RF Feces 492 Meta Yachida et al., 2019
12 genus NA NA 0.846 16SrDNA RF Feces 1674 Meta Sze and Schloss, 2018
18 OTUs NA NA 0.831 16SrDNA RF Feces 404 Canada, United States Baxter et al., 2016a
32 OTUs NA NA 0.853 16SrDNA RF Feces 404 Canada, United States Baxter et al., 2016a
41 OTUs NA NA 0.686 16SrDNA RF Feces 404 Canada, United States Baxter et al., 2016a
12 phylotypes NA NA 0.831 16SrDNA LEfSe Mucosa 160 China Nakatsu et al., 2015
18 OTUs NA NA 0.871 16SrDNA RF Mucosa 160 China Nakatsu et al., 2015
38 phylotypes NA NA 0.846 16SrDNA Dirichlet MM Mucosa 160 China Nakatsu et al., 2015
m3, Fn, Ch, Bc 85.2 80.2 0.907 qPCR LR Feces 1012 China Liang et al., 2019
m3, Fn NA NA 0.891 qPCR LR Feces 1012 China Liang et al., 2019
Fn, Ch, m7, Bc 92.8 79.8 0.886 qPCR SLC Feces 370 China Liang et al., 2017
Fn, Ch, m7, Bc, Ri 74.3 88.9 0.843 qPCR LR Feces 128 China Liang et al., 2017
17 IMG species NA NA 0.860 Metagenomics IMG Feces 128 China Liang et al., 2017
7 species-level mOTUs NA NA 0.890 Metagenomics mOTUs Feces 128 China Liang et al., 2017
27 MLG NA NA 0.960 Metagenomics MLG Feces 128 China Liang et al., 2017
Fn, Pa, Pm (4 genes) NA NA 0.770 Metagenomics CRC index Feces 96 China, Denmark, Austrian, French Yu et al., 2017a
22 genes NA NA 0.998 Metagenomics RF Feces 107 China Yang et al., 2020
Cb, Cs NA NA 0.935 qPCR RF Feces 60 China Yang et al., 2020
7 CRC-enriched bacteria NA NA 0.800 Metagenomics SVM Feces 526 Meta Dai et al., 2018
55 species NA NA 0.830 Metagenomics RF Feces 181 Meta Sze and Schloss, 2018

DA, Decision Abundance; AR, Abundance Rate; SLC, Simple linear combination; Dirichlet MM, Dirichlet multinomial mixtures; Clostridium hathewayi (Ch); Unclassified species (m7); Roseburia intestinalis (Ri); Bacteroides thetaiotaomicron (Bt).