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Input file structure for Cascabel. (A) This input file structure is generated from the file paths provided in the config file when the dataset consists of a single sequencing library. For multiple libraries, it is created from a text file specifying the individual libraries or by the helper script initSample.sh. (B) Example of a barcode mapping file for four samples. Barcode and primer sequences are listed in 5′-3′ direction and have been abbreviated.
