(A) Steady-state levels of Ub conjugates were assessed in WT and UCH37KO cells using the indicated antibodies. WT and UCH37KO cells were transfected with inactive (C88A and C88S) and active forms of UCH37 and the levels of Ub conjugates were also probed.
(B) Schematic for GFPu turnover in cells.
(C) Fluorescence histograms of WT HEK293 GFPu cells, UCH37KO GFPu cells, and UCH37KO GFPu cells expressing either WT UCH37 (UCH37KO + WT UCH37) or inactive UCH37 (UCH37KO + UCH37 C88S). Mean GFP fluorescence measured in 2 independent experiments.
(D) Schematic for measuring global protein turnover using azidohomoalanine (AHA) labeling of newly synthesized proteins in cells. AHA incorporated proteins were labeled with DBCO-Cy5, separated by SDS-PAGE and visualized by Cy5 fluorescence.
(E) Cy5 fluorescence analysis of the turnover of AHA-labeled proteins at different chase times in WT, UCH37KO, and UCH37KO HEK293 FT cells expressing WT UCH37 or inactive UCH37 C88S (top) with corresponding Sypro total protein stain (bottom).
(F) Densitometric quantification of AHA labeled proteins with molecular weights ≤ 50 kDa. Values at each time point are adjusted relative to total protein. Results are shown as mean ± SEM from 3 independent experiments.
(G) Model showing UCH37-catalyzed Ub chain debranching promotes proteasomal degradation.
See also Figure S7 and Table S1H.