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. 2020 Oct 6;10(12):4553–4563. doi: 10.1534/g3.120.401824

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Copyright © 2020 Miller et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Little overlap between main effect QTL and epistatic QTL pairs. (A,B) LOD scores for peak SNPs defining significant epistatic QTL pairs were plotted against the corresponding main effect LOD scores for each SNP within the epistatic pair. (C) LOD scores for peak SNPs defining significant main effect QTL were plotted against the most significant interaction LOD score for that SNP. The solid horizontal red line in panels A and B indicates the threshold level for significance for epistatic QTL pairs and the vertical dashed red line in panel C indicates the threshold level for significance for main effect QTL.