Table 2. Number of SNPs in each combination of mapping method (i.e., JoinMap 4.1 vs. Lep-MAP3), grouping accuracy (i.e., whether a SNP is assigned to the consensus linkage group for its contig, conLG, or not, non-conLG), and level of family support (i.e., whether a SNP is mapped in one or more than one family).

	JoinMap 4.1		Lep-MAP3
	1 family	>1 family	1 family	>1 family	totals
conLG	1,607	846	45,795	16,919	65,167
non-conLG	44	5	2,163	256	2,468
totals	1,651	851	47,958	17,175	67,635