Table 1.

Summary of sequence data and mapping statistics of the rice genotypes used in this study.

	Total raw reads	Total filtered reads	Sequencing depth (fold)	Total mapped reads	Genome coverage (%)	Uniquely mapped reads
Pokkali	68,001,168	63,188,954 (92.9%)	14.7	62,376,939 (98.7%)	92.7	45,061,913 (71.3%)
Nona Bokra	65,901,336	60,705,534 (92.1%)	14.1	59,995,162 (98.8%)	92.2	43,889,764 (72.3%)
Cocodrie	53,807,980	49,931,256 (97.5%)	11.6	49,478,104 (99.1%)	95.1	39,103,676 (78.3%)
Bengal	104,386,506	98,771,468 (94.6%)	23.0	98,132,017 (99.4%)	96.6	80,529,369 (81.5%)
IR64	121,235,526	113,048,322 (93.3%)	26.3	109,233,476 (96.6%)	86.7	79,987,053 (70.8%)