Table 2.
Protein sequence information of sturgeon and sequence similarity with corresponding orthologs
| Protein | TRINITY gene id | Protein length (aa) | CDS type | Sequence similarity with orthologs | ||||
|---|---|---|---|---|---|---|---|---|
| Species | Identity | Query Coveragea | NCBI Accession | Length (aa) | ||||
| Fgf8 | DN85003_c0_g1 | 211 | complete | Sterlet | 98.44% | 90% | XP_034775828.1 | 193 |
| Paddlefish | 92.34% | 99% | ARW70855.1 | 198 | ||||
| Zebrafish | 85.78% | 100% | NP_571356.2 | 210 | ||||
| Human | 86.29% | 82% | NP_149353.1 | 244 | ||||
| Pax2a | DN109703_c2_g2 | 446 | 5′ partial | Sterlet | 96.86% | 55% | XP_034774454.1 | 270 partial |
| Paddlefish | 98.28% | 52% | ADZ48384.1 | 284 partial | ||||
| Zebrafish | 72.26% | 100% | NP_571259.1 | 391 | ||||
| Human | 67.02% | 100% | NP_003978.3 | 417 | ||||
| Tbx18b | DN105164_c0_g1 | 571 | complete | Sterlet | 93.35% | 99% | XP_033860043.1 | 571 |
| Zebrafish | 72.37% | 100% | NP_705951.1 | 554 | ||||
| Human | 69.59% | 99% | NP_001073977.1 | 607 | ||||
| Ep300b | DN112243_c1_g1 | 112 | 3′ partial | Sterlet | 96.52% | 100% | XP_034774298.1 | 270 partial |
| Zebrafish | 75.00% | 78% | XP_009297682.1 | 2646 | ||||
| Human | 67.77% | 100% | NP_001420.2 | 2414 | ||||
| Ptch1 | DN119522_c2_g2 | 1458 | complete | Sterlet | 98.35% | 100% | XP_033875282.2 | 1457 |
| Paddlefish | 94.50% | 28% | ABP96781.1 | 418 partial | ||||
| Zebrafish | 75.23% | 99% | NP_001292471.1 | 1475 | ||||
| Human | 80.40% | 96% | NP_001077072.1 | 1446 | ||||
aThe sequence coverage of alignment in corresponding sturgeon protein. bSequences of paddlefish orthologs are not available