Table 1.
Admixture proportions from supervised analyses (mean ± SD) of African indigenous breeds for indicine, African taurine and total European taurine ancestry
| Breed | K = 7 | K = 11 | ||||||
|---|---|---|---|---|---|---|---|---|
| Indicine | N’Dama | EUT | Indicine | N’Dama | Somba | EUT | NDA1 + LAG+BAO | |
| Baoule | 0.01 ± 0.02 | 0.99 ± 0.02 | 0 | Fixed ancestral breeds | ||||
| Somba | 0.04 ± 0.01 | 0.95 ± 0.01 | 0 | |||||
| Lagune | 0 | 0.99 ± 0.00 | 0 | |||||
| N’Dama1 | 0 | 0.99 ± 0.00 | 0 | |||||
| N’Dama2 | 0.08 ± 0.03 | 0.93 ± 0.03 | 0 | 0.04 ± 0.02 | 0.15 ± 0.05 | 0.02 ± 0.02 | 0 | 0.79 ± 0.12 |
| N’Dama3 | 0.12 ± 0.04 | 0.88 ± 0.04 | 0 | 0.05 ± 0.04 | 0 | 0 | 0 | 0.95 ± 0.06 |
| Lagunaire | 0 | 0.99 ± 0.00 | 0 | 0 | 0 | 0 | 0 | 0.99 ± 0.00 |
| Africander | 0.42 ± 0.01 | 0.48 ± 0.02 | 0.10 ± 0.02 | 0.23 ± 0.01 | 0.06 ± 0.01 | 0.67 ± 0.02 | 0.04 ± 0.03 | 0 |
| Tuli | 0.32 ± 0.02 | 0.36 ± 0.02 | 0.32 ± 0.04 | 0.18 ± 0.02 | 0.06 ± 0.02 | 0.49 ± 0.01 | 0.26 ± 0.07 | 0.01 ± 0.01 |
| Djakore | 0.57 ± 0.02 | 0.43 ± 0.02 | 0 | 0.46 ± 0.02 | 0.52 ± 0.02 | 0.01 ± 0.01 | 0 | 0 |
| Gobra | 0.65 ± 0.06 | 0.35 ± 0.06 | 0 | 0.55 ± 0.06 | 0.45 ± 0.06 | 0.00 ± 0.01 | 0 | 0 |
| Maure | 0.68 ± 0.02 | 0.32 ± 0.02 | 0 | 0.57 ± 0.02 | 0.41 ± 0.02 | 0.02 ± 0.02 | 0 | 0 |
| GobraxMaure | 0.66 ± 0.06 | 0.33 ± 0.07 | 0.01 ± 0.01 | 0.56 ± 0.06 | 0.43 ± 0.07 | 0.01 ± 0.01 | 0.01 ± 0.01 | 0 |
| Bororo | 0.73 ± 0.02 | 0.27 ± 0.02 | 0 | 0.61 ± 0.02 | 0.31 ± 0.02 | 0.08 ± 0.02 | 0 | 0 |
| Fulani | 0.71 ± 0.03 | 0.29 ± 0.03 | 0 | 0.60 ± 0.03 | 0.34 ± 0.02 | 0.06 ± 0.02 | 0 | 0.01 ± 0.01 |
| Kuri | 0.50 ± 0.02 | 0.50 ± 0.02 | 0 | 0.38 ± 0.02 | 0.40 ± 0.02 | 0.17 ± 0.02 | 0 | 0 |
| Borgou | 0.47 ± 0.07 | 0.53 ± 0.07 | 0 | 0.37 ± 0.06 | 0.32 ± 0.03 | 0.10 ± 0.02 | 0 | 0.21 ± 0.01 |
| Ankole | 0.61 ± 0.02 | 0.36 ± 0.02 | 0.03 ± 0.02 | 0.37 ± 0.02 | 0 | 0.62 ± 0.02 | 0.00 ± 0.01 | 0 |
| Ankole-Watusi | 0.55 ± 0.02 | 0.32 ± 0.02 | 0.13 ± 0.04 | 0.35 ± 0.02 | 0 | 0.59 ± 0.02 | 0.06 ± 0.05 | 0 |
| SEAZ | 0.81 ± 0.02 | 0.18 ± 0.01 | 0.01 ± 0.01 | 0.64 ± 0.02 | 0 | 0.36 ± 0.02 | 0 | 0 |
| Madegascar-zebu | 0.85 ± 0.03 | 0.15 ± 0.01 | 0.01 ± 0.02 | 0.69 ± 0.03 | 0 | 0.31 ± 0.02 | 0.01 ± 0.02 | 0 |
| Danakil-Harar | 0.88 ± 0.01 | 0.12 ± 0.01 | 0 | 0.74 ± 0.01 | 0 | 0.26 ± 0.01 | 0 | 0 |
| Begait-Barka | 0.85 ± 0.04 | 0.14 ± 0.04 | 0.01 ± 0.04 | 0.72 ± 0.03 | 0.03 ± 0.02 | 0.24 ± 0.03 | 0.01 ± 0.01 | 0.00 ± 0.01 |
| Boran Ethiopia | 0.87 ± 0.01 | 0.13 ± 0.01 | 0 | 0.72 ± 0.01 | 0 | 0.28 ± 0.01 | 0 | 0 |
| Boran Ethiopia1 | 0.83 ± 0.02 | 0.12 ± 0.01 | 0.06 ± 0.01 | 0.69 ± 0.01 | 0 | 0.26 ± 0.01 | 0.05 ± 0.01 | 0 |
| Boran Kenya | 0.90 ± 0.01 | 0.10 ± 0.01 | 0 | 0.75 ± 0.01 | 0 | 0.25 ± 0.01 | 0 | 0 |
| Fogera | 0.84 ± 0.01 | 0.16 ± 0.01 | 0 | 0.69 ± 0.01 | 0 | 0.30 ± 0.02 | 0.00 ± 0.02 | 0 |
| Iringa-Red | 0.85 ± 0.03 | 0.14 ± 0.01 | 0.01 ± 0.03 | 0.68 ± 0.02 | 0 | 0.31 ± 0.01 | 0.01 ± 0.02 | 0 |
| Singida-White | 0.87 ± 0.01 | 0.13 ± 0.01 | 0 | 0.71 ± 0.02 | 0 | 0.29 ± 0.01 | 0 | 0 |
| Central Highland | 0.85 ± 0.13 | 0.15 ± 0.01 | 0.00 ± 0.01 | 0.70 ± 0.02 | 0 | 0.30 ± 0.012 | 0 | 0 |
| Sheko | 0.67 ± 0.02 | 0.32 ± 0.01 | 0.01 ± 0.01 | 0.48 ± 0.02 | 0.00 ± 0.01 | 0.51 ± 0.02 | 0 | 0 |
| Sheko1 | 0.67 ± 0.02 | 0.32 ± 0.01 | 0.01 ± 0.01 | 0.49 ± 0.02 | 0.01 ± 0.01 | 0.50 ± 0.02 | 0 | 0 |
| Mpwapwa | 0.87 ± 0.03 | 0.01 ± 0.02 | 0.12 ± 0.03 | 0.81 ± 0.03 | 0 | 0.01 ± 0.02 | 0.11 ± 0.05 | 0.07 ± 0.02 |
| Oulmes Zaer | 0.01 ± 0.01 | 0.38 ± 0.04 | 0.60 ± 0.04 | 0 | 0.02 ± 0.03 | 0 | 0.52 ± 0.09 | 0.45 ± 0.05 |
EUT 5 European Bos taurus breeds, NDA1 N’Dama1, LAG Lagune, BAO Baoule