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. 2020 Dec 8;10:21466. doi: 10.1038/s41598-020-78511-y

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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t-SNE visualization of the normalized microbe-gene co-mentioning matrix derived from PubMed queries for the microbes from the following four phyla: Firmicutes, Proteobacteria, Bacteroidetes, and Actinobacteria. The t-SNE was applied to the TF-IDF normalized (see “Methods”) microbe-gene co-mentioning matrix to calculate the 2-D coordinates for individual microbial genus or species. Each dot in the scatter plot represents a microbial genus or species, which is colored by their respective phylum based on Greengenes taxonomy.