Table 2. Overview about A. trichopoda homologs of Arabidopsis genes reported to play a role in PG and PT functions, which were identified by using proteomic analyses.
TPM values represent the average expression of three biological replicates and are listed according to their expression level in PT-Tri. Significant enrichment of a given protein in PT or PG tissues is represented with a "x" (see Supplemental Tables S7 and S8 for details). Gene symbols according to putative Arabidopsis homologs.
| A. trichopoda Gene ID | PG | PT-Bi | PT-Tri | UniProt ID | PG | PT | Gene symbol | E-value | Description | Reference |
|---|---|---|---|---|---|---|---|---|---|---|
| AMTR_s00040p00188020 | 5,074 | 9,773 | 10,488 | W1PZU9 | – | x | VGD1 | 1.00E−132 | Pectin methylesterase | Jiang et al., 2005 |
| AMTR_s00007p00264370 | 4,953 | 8,603 | 8,447 | W1P6M7 | – | x | AtPPME1 | 5.00E−119 | Pectin methylesterase | Tian et al., 2006 |
| AMTR_s00029p00242570 | 829 | 2,137 | 2,718 | W1PRD0 | – | x | LRX10 | 4.00E−47 | Leu-rich repeat extensin-like protein |
Mecchia et al., 2017; Fabrice et al., 2018; Wang et al., 2018 |
| LRX11 | 7.00E−45 | |||||||||
| LRX8 | 3.00E−48 | |||||||||
| LRX9 | 2.00E−46 | |||||||||
| AMTR_s00025p00206890 | 263 | 522 | 531 | W1PWK6 | – | x | PRK1 | 0.00E+00 | Leu-rich repeat RLK |
Takeuchi and Higashiyama, 2016 |
| PRK2 | 0.00E+00 | |||||||||
| PRK4 | 0.00E+00 | |||||||||
| PRK5 | 0.00E+00 | |||||||||
| PRK7 | 4.00E−142 | |||||||||
| AMTR_s00066p00182490 | 291 | 300 | 289 | U5DFR5 | – | x | COBL10 | 0.00E+00 | GPI-anchored protein | Li et al., 2013 |
| AMTR_s00007p00221730 | 240 | 282 | 267 | W1P698 | – | x | ATAPY1 | 0.00E+00 | Apyrase | Wolf et al., 2007 |
| ATAPY2 | 0.00E+00 | |||||||||
| AMTR_s00099p00037820 | 200 | 161 | 179 | W1NYC9 | – | x | ATP | 3.00E−98 | Mitochondrial ATP synthase subunit | Geisler et al., 2012 |
| AMTR_s00047p00209120 | 106 | 98 | 100 | U5D8W3 | – | x | RGP1 | 0.00E+00 | UDP-l-arabinose mutase | Drakakaki et al., 2006 |
| RGP2 | 0.00E+00 | |||||||||
| AMTR_s00102p00131940 | 6 | 117 | 103 | W1P0U0 | – | x | QRT3 | 2.00E−155 | Polygalacturonase | Rhee et al., 2003 |
| AMTR_s00153p00086670 | 69 | 103 | 77 | W1PMJ7 | – | x | EXO70C2 | 5.00E−158 | Putative exocyst subunit | Synek et al., 2017 |
| AMTR_s00024p00207140 | 62 | 90 | 65 | W1PMG6 | – | x | PDAT1 | 0.00E+00 | Phosphodiacylglycerol acyltransferase | Zhang et al., 2009 |
| AMTR_s00055p00193060 | 43 | 71 | 61 | U5DD49 | – | x | FIM5 | 0.00E+00 | Actin bundling factor | Wu et al., 2010 |
| AMTR_s00044p00070480 | 29 | 32 | 54 | U5D9M4 | – | x | UGP1 | 0.00E+00 | UDP-Glc pyrophosphorylase | Park et al., 2010 |
| UGP2 | 0.00E+00 | |||||||||
| AMTR_s00010p00252880 | 37 | 47 | 35 | W1NFY8 | – | x | AtUTr1 | 0.00E+00 | UDP-Gal/ Glc transporter | Reyes et al., 2010 |
| AtUTr3 | 0.00E+00 | |||||||||
| AMTR_s00080p00116860 | 26 | 38 | 35 | W1PBE5 | – | x | DRP2A | 0.00E+00 | GTPase | Backues et al., 2010 |
| AMTR_s00010p00159850 | 27 | 22 | 31 | W1NED9 | – | x | PGM2 | 0.00E+00 | Phosphoglucomutase | Egli et al., 2010 |
| AMTR_s00020p00173350 | 18 | 22 | 24 | W1PVM3 | – | x | RGP5 | 1.00E−137 | UDP-l-arabinose mutase | Drakakaki et al., 2006 |
| AMTR_s00176p00051440 | 15 | 17 | 15 | W1PUK2 | – | x | DRP1C | 0.00E+00 | Dynamin-like protein | Kang et al., 2003 |
| AMTR_s00039p00217390 | 13 | 13 | 14 | U5D3A4 | – | x | GAPCp1 | 0.00E+00 | Phosphate dehydrogenase | Muñoz-Bertomeu et al., 2010 |
| GAPCp2 | 0.00E+00 | |||||||||
| AMTR_s00067p00130250 | 13 | 10 | 12 | U5DBN7 | – | x | MGP1 | 7.00E−116 | Mitochondrial F1F0-ATP synthase | Li et al., 2010 |
| AMTR_s00019p00240770 | 7 | 13 | 10 | W1PJV7 | – | x | VLN5 | 0.00E+00 | Actin filament bundling protein | Zhang et al., 2010 |
| AMTR_s00002p00227840 | 6 | 9 | 8 | W1P2M5 | – | x | ARGAH1 | 0.00E+00 | Arginase | Brownfield et al., 2008 |
| AMTR_s00013p00172160 | 5 | 5 | 5 | W1PIV7 | – | x | AtKDSA2 | 0.00E+00 | Phosphate synthetase | Delmas et al., 2008 |
| AMTR_s00003p00020850 | 2 | 4 | 5 | W1P5X2 | – | x | MIRO1 | 0.00E+00 | GTPases | Sørmo et al., 2011 |
| AMTR_s00019p00246290 | 1 | 1 | 1 | W1PHG5 | – | x | PUR4 | 0.00E+00 | Ribonucleotide synthase | Berthomé et al., 2008 |
| AMTR_s00155p00043060 | 1 | 2 | 1 | W1PJ58 | – | x | IPMDH2 | 0.00E+00 | 3-Isopropylmalate dehydrogenase | He et al., 2011 |
| IPMDH3 | 0.00E+00 | |||||||||
| AMTR_s00022p00227570 | 14 | 29 | 21 | W1PWI7 | x | – | RABA4D | 8.00E−138 | Rab GTPase |
Szumlanski and Nielsen, 2009 |
| AMTR_s00103p00075300 | 1 | 0 | 0 | W1NZP8 | x | – | STP6 | 0.00E+00 | Hexose transporter |
Scholz-Starke et al., 2003 |