TABLE 2.
Significantly enriched GO terms among the genes up and downregulated in the tyrR mutant
| Expression | Gene ontology term(s)a | Process |
|---|---|---|
| Up | GO:0006805, GO:0071466, GO:0042178, GO:0009410 | Xenobiotic metabolism |
| GO:0042537, GO:0010124, GO:0019439, GO:1901361 | Aromatic catabolic processes | |
| GO:0072329, GO:0016054, GO:0046395 | Organic carboxylic acid breakdown | |
| Down | GO:0009061, GO:0009055 | Anaerobic respiration |
| GO:0009331, GO:0046168 | Glyceraldehyde-3-phosphate dehydrogenase | |
| GO:0015944 | Formate oxidation | |
| GO:0006935 | Chemotaxis | |
| GO:0004888 | Transmembrane signaling |
a
GOSeq called terms significantly enriched at a Padj value of <0.01, applying the Benjamini-Hochberg correction method.