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. 2020 Nov 30;6(2):veaa058. doi: 10.1093/ve/veaa058

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© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 2. — (A) Tobamo-virga-alpha genome organizations. Top ruler indicates the length in kb. (B) Tobamo-virga-alpha virus tree computed by IQ-TREE stochastic algorithm to infer phylogenetic trees by maximum likelihood. Model of substitution: Blosum64+F-I+G4. Consensus tree is constructed from 1,000 bootstrap trees. Log-likelihood of consensus tree: −120571.621. Purple label indicates the tobamovirus, orange labels indicate viviviruses in different sub-clades, light blue label indicates virga-like virus, and the blue one indicates the alphavirus. At nodes the percentage bootstrap values. (C) Sequence alignment of vivivirus 5′ and 3′ UTRs.