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[Preprint]. 2020 Dec 6:2020.12.05.409821. [Version 1] doi: 10.1101/2020.12.05.409821

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Figure 3. — Conservation of 5’-end sequences encoding RNA structures in betacoronavirus genomes. Multiple sequence alignment showing percentage identity and sequence coverage within the 5’ untranslated and adjacent region of representative species within genus Betacoronavirus. Stem loop (SL) structures 2 and 3 are highly conserved, while other stem loops show moderate conservation. Viral subgenus is indicated as shown in the key. Sequence numbering is standardised to the genome sequence start position of each taxon. Taxon labels show GenBank accession numbers and abbreviated virus names. Abbreviations: OC43=Human coronavirus OC43; SARS=Severe acute respiratory syndrome coronavirus; RousettusBat=Rousettus bat coronavirus MERS=Middle East respiratory syndrome-related coronavirus; Bat-Hibeco=Bat Hp-betacoronavirus.