Table 1.
Overall | TP | FP | TN | FN | PPA (95% CI) | NPA (95% CI) |
---|---|---|---|---|---|---|
NP sample | 76 | 1 | 519 | 56 | 57.3% (48.3–65.8) | 99.8% (98.8–100) |
Nasal sample | 59 | 0 | 527 | 73 | 44.7% (36.1–53.6) | 100% (99.1–100) |
Saliva sample | 28 | 0 | 489 | 93 | 23.1% (16.2–31.9) | 100% (99–100) |
Nasal+saliva | 60 | 0 | 489 | 61 | 49.6% (40.4–58.8) | 100% (99–100) |
Nasal sample | ||||||
Symptomatic | 51 | 0 | 297 | 46 | 52.6% (42.2–62.7) | 100% (98.4–100) |
Ct ≤ 25 | 43 | 0 | 0 | 12 | 78% (65–88) | |
Ct ≤ 30 | 48 | 0 | 0 | 25 | 66% (54–76) | |
Ct ≤ 35 | 51 | 0 | 0 | 43 | 54% (44–64) | |
Asymptomatic | 8 | 0 | 230 | 27 | 22.9% (11–40.6) | 100% (98–100) |
Ct ≤ 25 | 8 | 0 | 0 | 5 | 62% (32–85) | |
Ct ≤ 30 | 8 | 0 | 0 | 15 | 35% (17–57) | |
Ct ≤ 35 | 8 | 0 | 0 | 24 | 25% (0–69) | |
Saliva sample | ||||||
Symptomatic | 25 | 0 | 277 | 64 | 28.1% (19.3–38.8) | 100% (98.3–100) |
Ct ≤ 25 | 21 | 0 | 0 | 30 | 41% (28–56) | |
Ct ≤ 30 | 25 | 0 | 0 | 42 | 37% (26–50) | |
Ct ≤ 35 | 25 | 0 | 0 | 61 | 29% (20–40) | |
Asymptomatic | 3 | 0 | 212 | 29 | 9.4% (2.5–2.6) | 100% (97.8–100) |
Ct ≤ 25 | 3 | 0 | 0 | 9 | 25% (7–57) | |
Ct ≤ 30 | 3 | 0 | 0 | 17 | 15% (4–39) | |
Ct ≤ 35 | 3 | 0 | 0 | 26 | 10% (3–28) | |
Nasal+saliva | ||||||
Symptomatic | 55 | 0 | 277 | 37 | 58.4% (47.5–68.6) | 100% (98.3–100) |
Ct ≤ 25 | 45 | 0 | 0 | 8 | 85% (72–93) | |
Ct ≤ 30 | 52 | 0 | 0 | 18 | 74% (62–84) | |
Ct ≤ 35 | 55 | 0 | 0 | 34 | 62% (51–72) | |
Asymptomatic | 9 | 0 | 212 | 24 | 27.3% (13.9–45.8) | 100% (97.8–100) |
Ct ≤ 25 | 9 | 0 | 0 | 4 | 69% (39–90) | |
Ct ≤ 30 | 9 | 0 | 0 | 12 | 43% (23–66) | |
Ct ≤ 35 | 9 | 0 | 0 | 21 | 30% (0–69) |
Unless specified, all analyses have been performed in nasopharyngeal samples. TP, true positive; FP, false positive; TN, true negative; FN, false negative; PPA, positive percent agreement; NPA, negative percent agreement; NP, nasopharyngeal; Ct, cycle threshold of RT-PCR.