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. 2020 Nov 11;6(11):mgen000453. doi: 10.1099/mgen.0.000453

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© 2020 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 3. — Assembly likelihoods were calculated with the assembly likelihood estimator (ALE) by mapping Illumina reads to hybrid assemblies. Likelihoods were calculated for assemblies of each barcoded isolate (y-axis) created at 6 h intervals up to 48 h (x-axis). A likelihood difference of 0 (blue) implies that the assembly at time t is equally as likely as that at t=48 h. A positive likelihood difference (orange) implies that the assembly at time t was better than at 48 h and a negative likelihood difference (green) implies a worse assembly at time t vs 48 h.