Skip to main content
. 2020 Dec 7;55(5):629–647.e7. doi: 10.1016/j.devcel.2020.09.025
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

RNF12 Novus Biologicals Cat#H00051132-M01; RRID: AB_547742
ERK1 BD Biosciences Cat#610408; RRID: AB_397790
SRPK1 BD Biosciences Cat#611072; RRID: AB_398385
SRPK2 BD Biosciences Cat#611118; RRID: AB_398429
HA-tag Abcam Cat#ab9110; RRID: AB_307019
REX1 Abcam Cat#ab28141; RRID: AB_882332
SRPK3 R&D Systems Cat#MAB7230-SP
FLAG Sigma Aldrich Cat#F1804-50UG; RRID: AB_262044
HA-HRP Roche Cat#12013819001; RRID: AB_390917
Synaptophysin Cell Signaling Technologies Cat#5461 (D35E4); RRID: AB_10698743
beta-actin Cell Signaling Technologies Cat#4970 (13E5); RRID: AB_2223172
RNF12 (1-271) MRC-PPU Reagents and Services Cat#S691D third bleed
RNF12 pSer212/214 (QRRARpSRpSPEHRR) MRC-PPU Reagents and Services Cat#SA310 fourth bleed
GST MRC-PPU Reagents and Services Cat#S902A third bleed
Phosphoepitope SR proteins Millipore Cat#MABE50 clone 1H4; RRID: AB_10807429
KLF4 R&D Systems Cat#AF3158; RRID: AB_2130245
MAP2 Sigma Aldrich Cat#M2320; RRID: AB_609904
HA-tag Sigma Aldrich Cat#A2095 agarose beads; RRID: AB_257974

Chemicals, Peptides, and Recombinant Proteins

AZ191 Tocris Cat#5232
KH-CB19 Merck Millipore Cat#219511
CLK-IN-T3 Aobious Cat#AOB8827
SPHINX31 Axon Medchem Cat#Axon 2714
CHIR99021 Axon Medchem Cat#Axon 1386
PD0325901 Axon Medchem Cat#Axon 1408
VX-745 Selleckchem Cat#S1458
JNK-IN-8 Selleckchem Cat#S4901
RO-3306 Sigma Aldrich Cat#SML0569
Flavopiridol Stratech Cat#S2679
CCT241533 Cayman Cat#CAY19178
Harmine Sigma Aldrich Cat#286044
WEHI-345 Cayman Cat#CAY23023
IRAK-4 Ina MRC-PPU Reagents and Services N/A
GSK461364 Cayman Cat#CAY18099
SRPIN340 Sigma Aldrich Cat#SML1088
MG132 Sigma Aldrich Cat#C2211
Cycloheximide Sigma Aldrich Cat#C7698
Leptomycin B Sigma Aldrich Cat#L2913
Madrasin (DDD00107587) Kind gift of Dr. Andrea Pawellek (University of Dundee) N/A
Phos-Tag MRC-PPU Reagents and Services N/A
RNF12 MRC-PPU Reagents and Services DU61098
RNF12 S212A S214A S227A S229A MRC-PPU Reagents and Services DU53249
DYRK1a MRC-PPU Reagents and Services DU19040
CLK2 MRC-PPU Reagents and Services DU16987
GSK3beta MRC-PPU Reagents and Services DU899
ERK1 (MAPK3) MRC-PPU Reagents and Services DU1509
ERK2 (MAPK1) MRC-PPU Reagents and Services DU650
JNK3 alpha 1 (SAPK1b) MRC-PPU Reagents and Services DU1511
p38 alpha (SAPK2a) MRC-PPU Reagents and Services DU979
CDK2 - CyclinA MRC-PPU Reagents and Services DU43557
CDK5 - p35 MRC-PPU Reagents and Services DU39816
CDK7 - MAT1 - Cyclin H MRC-PPU Reagents and Services DU49574
CDK9 - Cyclin T1 MRC-PPU Reagents and Services DU31050
REX1 MRC-PPU Reagents and Services DU53244
SMAD7 MRC-PPU Reagents and Services DU19219
SRPK1 MRC-PPU Reagents and Services DU967
SRPK2 MRC-PPU Reagents and Services DU36135
SRPK3 MRC-PPU Reagents and Services DU967
SRPK1 D497A MRC-PPU Reagents and Services DU66208
SRPK2 D541A MRC-PPU Reagents and Services DU66209
SRPK3 H159D MRC-PPU Reagents and Services DU61121
SRPK3 T211M MRC-PPU Reagents and Services DU61140
SRPK3 K270M MRC-PPU Reagents and Services DU61135
Ube1 MRC-PPU Reagents and Services DU32888
UBE2D1 (UbcH5a) MRC-PPU Reagents and Services DU4315
FLAG-Ubiquitin MRC-PPU Reagents and Services DU46789
Ubiquitin MRC-PPU Reagents and Services DU20027
Ubiquitin IR-800 Walden lab (Uni of Glasgow) N/A

Critical Commercial Assays

SRPKIN-1 kinase inhibitor profiling This paper http://www.kinase-screen.mrc.ac.uk/services/express-screen

Deposited Data

Raw RNA-SEQ data This paper GEO: GSE149554
Raw Brain Cortex Single Nucleus RNA-SEQ data Hodge et al., 2019 dbGAP: phs001790
Raw hiPSC mass-spectrometry data Brenes et al., 2020 PRIDE: PXD010557

Experimental Models: Cell Lines

Mouse: Embryonic Stem Cells Laboratory of Janet Rossant, SickKids Research Institute, Toronto CCE line
Human: induced Pluripotent Stem Cells Cellartis AB
Human Pluripotent Stem Cell Core Facility, School of Life Sciences, University of Dundee
CHiPS4 line
Human: Neuro2A ATCC Cat#CCL-131
Human: HEK 293 ATCC Cat#CRL-1573
Human: U2OS ATCC Cat#HTB-96
Human: MCF7 ATCC Cat#CRL-3435

Experimental Models: Organisms/Strains

Mouse: C57B6/J Animal Facility, School of Life Sciences, University of Dundee N/A

Oligonucleotides

Primers for qRT-PCR, see Table S8 This paper N/A
Primers for genomic DNA sequencing, see Table S8 This paper N/A
gRNA sequences for CRISPR/Cas9, see Table S8 This paper N/A
ON-TARGETplus Srpk2 siRNA 06 Horizon Discovery Cat#J-055142-06-0010
Non-targeting Pool siRNA Horizon Discovery Cat#D-001810-10-05

Recombinant DNA

pCAGGS PURO RNF12 MRC-PPU Reagents and Services DU50610
pCAGGS PURO RNF12 S212A MRC-PPU Reagents and Services DU53528
pCAGGS PURO RNF12 S214A MRC-PPU Reagents and Services DU50796
pCAGGS PURO RNF12 S227A MRC-PPU Reagents and Services DU53591
pCAGGS PURO RNF12 S229A MRC-PPU Reagents and Services DU53592
pCAGGS PURO RNF12 S212A S214A MRC-PPU Reagents and Services DU53518
pCAGGS PURO RNF12 S227A S229A MRC-PPU Reagents and Services DU53514
pCAGGS PURO RNF12 S214A S229A MRC-PPU Reagents and Services DU53593
pCAGGS PURO RNF12 S212A S214A S227A S229A MRC-PPU Reagents and Services DU50797
pCAGGS PURO RNF12 delta SR-motif MRC-PPU Reagents and Services DU53413
pCAGGS PURO HA-RNF12 MRC-PPU Reagents and Services DU50854
pCAGGS PURO HA-RNF12 S212A S214A S227A S229A MRC-PPU Reagents and Services DU58741
pCAGGS PURO RNF12 W576Y MRC-PPU Reagents and Services DU50800
pCAGGS PURO FLAG SRPK1 MRC-PPU Reagents and Services DU53820
pCAGGS PURO FLAG SRPK2 MRC-PPU Reagents and Services DU53821
pKN7 RLIM ex5 KO Sense A MRC-PPU Reagents and Services DU52037
pX335 RLIM ex5 KO antisense A + Cas9n MRC-PPU Reagents and Services DU52046
pBabeD P U6 RLIM (mouse) Cter KI Sense A MRC-PPU Reagents and Services DU57881
pX335 RLIM (mouse) Cter KI AntiSense A MRC-PPU Reagents and Services DU57891
pMA RLIM Cter R575C IRES-GFP donor MRC-PPU Reagents and Services DU57963
pMA RLIM Cter del 206-229 IRES-GFP donor MRC-PPU Reagents and Services DU57964
pMA RLIM Cter S212A S214A S227A S229A IRES-GFP donor MRC-PPU Reagents and Services DU57966
pMA RLIM Cter wt control IRES-GFP donor MRC-PPU Reagents and Services DU57967
pMA RLIM Cter W576Y IRES-GFP donor MRC-PPU Reagents and Services DU60290
pBabeD P U6 Srpk1 (mouse) ex3 KO Sense B MRC-PPU Reagents and Services DU60949
pX335 Srpk1 (mouse) ex3 KO Antisense B MRC-PPU Reagents and Services DU64462
pBabeD P U6 SRPK2 (mouse) ex5 KO Sense A MRC-PPU Reagents and Services DU64247
pX335 SRPK2 (mouse) ex5 KO Antisense A MRC-PPU Reagents and Services DU 64251
pBabeD P U6 ZFP42 (mouse) ex4 KO Sense A MRC-PPU Reagents and Services DU60065
pX335 ZFP42 (mouse) ex4 KO AntiSense A MRC-PPU Reagents and Services DU60072

Software and Algorithms

ScanProsite Hulo et al., 2006 https://prosite.expasy.org/scanprosite/
Image Studio LICOR Biosciences https://www.licor.com/bio/image-studio/
Image Lab Bio-Rad https://www.bio-rad.com/en-uk/product/image-lab-software?ID=KRE6P5E8Z
Kinoviewer Brenes and Lamond, 2019 https://peptracker.com
Proteome Discoverer v.2.0 Thermofisher https://www.thermofisher.com/order/catalog/product/OPTON-30812?SID=srch-srp-OPTON-30812#/OPTON-30812?SID=srch-srp-OPTON-30812
Mascot Matrix Science https://www.matrixscience.com/server.html
Image J NIH https://imagej.nih.gov/ij/download.html
STAR software (v2.7.1a) Dobin et al., 2013 https://github.com/alexdobin/STAR
HTSeq (v0.11.2) Anders et al., 2015 https://htseq.readthedocs.io/en/master/
SARTools (v1.6.9) Varet et al., 2016 https://github.com/PF2-pasteur-fr/SARTools
DESeq2 (v1.24) Love et al., 2014 https://bioconductor.org/packages/release/bioc/html/DESeq2.html
GOstats (v2.50.0) Falcon and Gentleman, 2007 https://www.bioconductor.org/packages/release/bioc/html/GOstats.html
GraphPad Prism (v7.0c) GraphPad Software Inc. https://www.graphpad.com/scientific-software/prism/