REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
RNF12 | Novus Biologicals | Cat#H00051132-M01; RRID: AB_547742 |
ERK1 | BD Biosciences | Cat#610408; RRID: AB_397790 |
SRPK1 | BD Biosciences | Cat#611072; RRID: AB_398385 |
SRPK2 | BD Biosciences | Cat#611118; RRID: AB_398429 |
HA-tag | Abcam | Cat#ab9110; RRID: AB_307019 |
REX1 | Abcam | Cat#ab28141; RRID: AB_882332 |
SRPK3 | R&D Systems | Cat#MAB7230-SP |
FLAG | Sigma Aldrich | Cat#F1804-50UG; RRID: AB_262044 |
HA-HRP | Roche | Cat#12013819001; RRID: AB_390917 |
Synaptophysin | Cell Signaling Technologies | Cat#5461 (D35E4); RRID: AB_10698743 |
beta-actin | Cell Signaling Technologies | Cat#4970 (13E5); RRID: AB_2223172 |
RNF12 (1-271) | MRC-PPU Reagents and Services | Cat#S691D third bleed |
RNF12 pSer212/214 (QRRARpSRpSPEHRR) | MRC-PPU Reagents and Services | Cat#SA310 fourth bleed |
GST | MRC-PPU Reagents and Services | Cat#S902A third bleed |
Phosphoepitope SR proteins | Millipore | Cat#MABE50 clone 1H4; RRID: AB_10807429 |
KLF4 | R&D Systems | Cat#AF3158; RRID: AB_2130245 |
MAP2 | Sigma Aldrich | Cat#M2320; RRID: AB_609904 |
HA-tag | Sigma Aldrich | Cat#A2095 agarose beads; RRID: AB_257974 |
Chemicals, Peptides, and Recombinant Proteins | ||
AZ191 | Tocris | Cat#5232 |
KH-CB19 | Merck Millipore | Cat#219511 |
CLK-IN-T3 | Aobious | Cat#AOB8827 |
SPHINX31 | Axon Medchem | Cat#Axon 2714 |
CHIR99021 | Axon Medchem | Cat#Axon 1386 |
PD0325901 | Axon Medchem | Cat#Axon 1408 |
VX-745 | Selleckchem | Cat#S1458 |
JNK-IN-8 | Selleckchem | Cat#S4901 |
RO-3306 | Sigma Aldrich | Cat#SML0569 |
Flavopiridol | Stratech | Cat#S2679 |
CCT241533 | Cayman | Cat#CAY19178 |
Harmine | Sigma Aldrich | Cat#286044 |
WEHI-345 | Cayman | Cat#CAY23023 |
IRAK-4 Ina | MRC-PPU Reagents and Services | N/A |
GSK461364 | Cayman | Cat#CAY18099 |
SRPIN340 | Sigma Aldrich | Cat#SML1088 |
MG132 | Sigma Aldrich | Cat#C2211 |
Cycloheximide | Sigma Aldrich | Cat#C7698 |
Leptomycin B | Sigma Aldrich | Cat#L2913 |
Madrasin (DDD00107587) | Kind gift of Dr. Andrea Pawellek (University of Dundee) | N/A |
Phos-Tag | MRC-PPU Reagents and Services | N/A |
RNF12 | MRC-PPU Reagents and Services | DU61098 |
RNF12 S212A S214A S227A S229A | MRC-PPU Reagents and Services | DU53249 |
DYRK1a | MRC-PPU Reagents and Services | DU19040 |
CLK2 | MRC-PPU Reagents and Services | DU16987 |
GSK3beta | MRC-PPU Reagents and Services | DU899 |
ERK1 (MAPK3) | MRC-PPU Reagents and Services | DU1509 |
ERK2 (MAPK1) | MRC-PPU Reagents and Services | DU650 |
JNK3 alpha 1 (SAPK1b) | MRC-PPU Reagents and Services | DU1511 |
p38 alpha (SAPK2a) | MRC-PPU Reagents and Services | DU979 |
CDK2 - CyclinA | MRC-PPU Reagents and Services | DU43557 |
CDK5 - p35 | MRC-PPU Reagents and Services | DU39816 |
CDK7 - MAT1 - Cyclin H | MRC-PPU Reagents and Services | DU49574 |
CDK9 - Cyclin T1 | MRC-PPU Reagents and Services | DU31050 |
REX1 | MRC-PPU Reagents and Services | DU53244 |
SMAD7 | MRC-PPU Reagents and Services | DU19219 |
SRPK1 | MRC-PPU Reagents and Services | DU967 |
SRPK2 | MRC-PPU Reagents and Services | DU36135 |
SRPK3 | MRC-PPU Reagents and Services | DU967 |
SRPK1 D497A | MRC-PPU Reagents and Services | DU66208 |
SRPK2 D541A | MRC-PPU Reagents and Services | DU66209 |
SRPK3 H159D | MRC-PPU Reagents and Services | DU61121 |
SRPK3 T211M | MRC-PPU Reagents and Services | DU61140 |
SRPK3 K270M | MRC-PPU Reagents and Services | DU61135 |
Ube1 | MRC-PPU Reagents and Services | DU32888 |
UBE2D1 (UbcH5a) | MRC-PPU Reagents and Services | DU4315 |
FLAG-Ubiquitin | MRC-PPU Reagents and Services | DU46789 |
Ubiquitin | MRC-PPU Reagents and Services | DU20027 |
Ubiquitin IR-800 | Walden lab (Uni of Glasgow) | N/A |
Critical Commercial Assays | ||
SRPKIN-1 kinase inhibitor profiling | This paper | http://www.kinase-screen.mrc.ac.uk/services/express-screen |
Deposited Data | ||
Raw RNA-SEQ data | This paper | GEO: GSE149554 |
Raw Brain Cortex Single Nucleus RNA-SEQ data | Hodge et al., 2019 | dbGAP: phs001790 |
Raw hiPSC mass-spectrometry data | Brenes et al., 2020 | PRIDE: PXD010557 |
Experimental Models: Cell Lines | ||
Mouse: Embryonic Stem Cells | Laboratory of Janet Rossant, SickKids Research Institute, Toronto | CCE line |
Human: induced Pluripotent Stem Cells | Cellartis AB Human Pluripotent Stem Cell Core Facility, School of Life Sciences, University of Dundee |
CHiPS4 line |
Human: Neuro2A | ATCC | Cat#CCL-131 |
Human: HEK 293 | ATCC | Cat#CRL-1573 |
Human: U2OS | ATCC | Cat#HTB-96 |
Human: MCF7 | ATCC | Cat#CRL-3435 |
Experimental Models: Organisms/Strains | ||
Mouse: C57B6/J | Animal Facility, School of Life Sciences, University of Dundee | N/A |
Oligonucleotides | ||
Primers for qRT-PCR, see Table S8 | This paper | N/A |
Primers for genomic DNA sequencing, see Table S8 | This paper | N/A |
gRNA sequences for CRISPR/Cas9, see Table S8 | This paper | N/A |
ON-TARGETplus Srpk2 siRNA 06 | Horizon Discovery | Cat#J-055142-06-0010 |
Non-targeting Pool siRNA | Horizon Discovery | Cat#D-001810-10-05 |
Recombinant DNA | ||
pCAGGS PURO RNF12 | MRC-PPU Reagents and Services | DU50610 |
pCAGGS PURO RNF12 S212A | MRC-PPU Reagents and Services | DU53528 |
pCAGGS PURO RNF12 S214A | MRC-PPU Reagents and Services | DU50796 |
pCAGGS PURO RNF12 S227A | MRC-PPU Reagents and Services | DU53591 |
pCAGGS PURO RNF12 S229A | MRC-PPU Reagents and Services | DU53592 |
pCAGGS PURO RNF12 S212A S214A | MRC-PPU Reagents and Services | DU53518 |
pCAGGS PURO RNF12 S227A S229A | MRC-PPU Reagents and Services | DU53514 |
pCAGGS PURO RNF12 S214A S229A | MRC-PPU Reagents and Services | DU53593 |
pCAGGS PURO RNF12 S212A S214A S227A S229A | MRC-PPU Reagents and Services | DU50797 |
pCAGGS PURO RNF12 delta SR-motif | MRC-PPU Reagents and Services | DU53413 |
pCAGGS PURO HA-RNF12 | MRC-PPU Reagents and Services | DU50854 |
pCAGGS PURO HA-RNF12 S212A S214A S227A S229A | MRC-PPU Reagents and Services | DU58741 |
pCAGGS PURO RNF12 W576Y | MRC-PPU Reagents and Services | DU50800 |
pCAGGS PURO FLAG SRPK1 | MRC-PPU Reagents and Services | DU53820 |
pCAGGS PURO FLAG SRPK2 | MRC-PPU Reagents and Services | DU53821 |
pKN7 RLIM ex5 KO Sense A | MRC-PPU Reagents and Services | DU52037 |
pX335 RLIM ex5 KO antisense A + Cas9n | MRC-PPU Reagents and Services | DU52046 |
pBabeD P U6 RLIM (mouse) Cter KI Sense A | MRC-PPU Reagents and Services | DU57881 |
pX335 RLIM (mouse) Cter KI AntiSense A | MRC-PPU Reagents and Services | DU57891 |
pMA RLIM Cter R575C IRES-GFP donor | MRC-PPU Reagents and Services | DU57963 |
pMA RLIM Cter del 206-229 IRES-GFP donor | MRC-PPU Reagents and Services | DU57964 |
pMA RLIM Cter S212A S214A S227A S229A IRES-GFP donor | MRC-PPU Reagents and Services | DU57966 |
pMA RLIM Cter wt control IRES-GFP donor | MRC-PPU Reagents and Services | DU57967 |
pMA RLIM Cter W576Y IRES-GFP donor | MRC-PPU Reagents and Services | DU60290 |
pBabeD P U6 Srpk1 (mouse) ex3 KO Sense B | MRC-PPU Reagents and Services | DU60949 |
pX335 Srpk1 (mouse) ex3 KO Antisense B | MRC-PPU Reagents and Services | DU64462 |
pBabeD P U6 SRPK2 (mouse) ex5 KO Sense A | MRC-PPU Reagents and Services | DU64247 |
pX335 SRPK2 (mouse) ex5 KO Antisense A | MRC-PPU Reagents and Services | DU 64251 |
pBabeD P U6 ZFP42 (mouse) ex4 KO Sense A | MRC-PPU Reagents and Services | DU60065 |
pX335 ZFP42 (mouse) ex4 KO AntiSense A | MRC-PPU Reagents and Services | DU60072 |
Software and Algorithms | ||
ScanProsite | Hulo et al., 2006 | https://prosite.expasy.org/scanprosite/ |
Image Studio | LICOR Biosciences | https://www.licor.com/bio/image-studio/ |
Image Lab | Bio-Rad | https://www.bio-rad.com/en-uk/product/image-lab-software?ID=KRE6P5E8Z |
Kinoviewer | Brenes and Lamond, 2019 | https://peptracker.com |
Proteome Discoverer v.2.0 | Thermofisher | https://www.thermofisher.com/order/catalog/product/OPTON-30812?SID=srch-srp-OPTON-30812#/OPTON-30812?SID=srch-srp-OPTON-30812 |
Mascot | Matrix Science | https://www.matrixscience.com/server.html |
Image J | NIH | https://imagej.nih.gov/ij/download.html |
STAR software (v2.7.1a) | Dobin et al., 2013 | https://github.com/alexdobin/STAR |
HTSeq (v0.11.2) | Anders et al., 2015 | https://htseq.readthedocs.io/en/master/ |
SARTools (v1.6.9) | Varet et al., 2016 | https://github.com/PF2-pasteur-fr/SARTools |
DESeq2 (v1.24) | Love et al., 2014 | https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
GOstats (v2.50.0) | Falcon and Gentleman, 2007 | https://www.bioconductor.org/packages/release/bioc/html/GOstats.html |
GraphPad Prism (v7.0c) | GraphPad Software Inc. | https://www.graphpad.com/scientific-software/prism/ |