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. 2020 Oct 20;72(9):499–506. doi: 10.1007/s00251-020-01181-7

Table 1.

PCR primers used to identify MHC alleles

MHC class Gene target Primer sequencea Amplicon size (bp) Reference
Class I UA MHCI_UA_F: ACCCCTGACCCTGCCGTGTC 313 Cheng et al. (2018)
MHCI_UA_R: CACCGCCTTCGCTCTGGTTGA
UC MHCI_UC_F: AAGGTCTCCAATGTTTCCGACTCA 397 Cheng et al. (2018)
MHCI_UC_R: TCTCGCGCTAAGGCCATACC
Class II DAb MHCII_DAb_F: ATGCCCCAAAGCACTTCAC 271 Lau et al. (2013)
MHCII_DAb_R: CGCACTRAGAAGGGCTCA
DBb MHCII_DBb_F: AGGGACATCCCAGAGGATTTCG 282 Lau et al. (2013)
MHCII_DBb_R: TCTTCTGTCCACCGCGAAGG
DCb MHCII_DCb_F: GGTGAGGTCTGAGTGTCACA 200 Abts et al. (2018)
MHCII_DCb_R: CATTCACTATGGACCTTGCAGT
DMb MHCII_DMb_F: CATGTGGAGAGTGGCTGTATG 266 Abts et al. (2018)
MHCII_DMb_R: GTCCTTTGGGTCAACGCTC

aFor Illumina MiSeq sequencing, adaptor sequences were added to the 5′ ends of each primer to allow for multiplex barcoding: forward adaptor: TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG; reverse adaptor: GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG