Table 1.
MHC class | Gene target | Primer sequencea | Amplicon size (bp) | Reference |
---|---|---|---|---|
Class I | UA | MHCI_UA_F: ACCCCTGACCCTGCCGTGTC | 313 | Cheng et al. (2018) |
MHCI_UA_R: CACCGCCTTCGCTCTGGTTGA | ||||
UC | MHCI_UC_F: AAGGTCTCCAATGTTTCCGACTCA | 397 | Cheng et al. (2018) | |
MHCI_UC_R: TCTCGCGCTAAGGCCATACC | ||||
Class II | DAb | MHCII_DAb_F: ATGCCCCAAAGCACTTCAC | 271 | Lau et al. (2013) |
MHCII_DAb_R: CGCACTRAGAAGGGCTCA | ||||
DBb | MHCII_DBb_F: AGGGACATCCCAGAGGATTTCG | 282 | Lau et al. (2013) | |
MHCII_DBb_R: TCTTCTGTCCACCGCGAAGG | ||||
DCb | MHCII_DCb_F: GGTGAGGTCTGAGTGTCACA | 200 | Abts et al. (2018) | |
MHCII_DCb_R: CATTCACTATGGACCTTGCAGT | ||||
DMb | MHCII_DMb_F: CATGTGGAGAGTGGCTGTATG | 266 | Abts et al. (2018) | |
MHCII_DMb_R: GTCCTTTGGGTCAACGCTC |
aFor Illumina MiSeq sequencing, adaptor sequences were added to the 5′ ends of each primer to allow for multiplex barcoding: forward adaptor: TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG; reverse adaptor: GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG