Table 1:
Summary of genome assembly and annotation for P. salicina
| Parameter | Value |
|---|---|
| Assembly feature | |
| Scaffolds | |
| Total length (bp) | 284,209,110 |
| No. | 75 |
| N50 (bp) | 32,324,625 |
| Contigs | |
| Total length (bp) | 284,189,410 |
| No. | 272 |
| N50 (bp) | 1,777,944 |
| Mapping rate by reads from short-insert libraries (%) | 96.93 |
| CEGs (%) | |
| Assembled | 94.35 |
| Completely assembled | 92.34 |
| BUSCOs (%) | |
| Complete | 95.7 |
| Complete and single-copy | 86.5 |
| Complete and duplicated | 9.2 |
| Fragmented | 1.3 |
| Missing | 3.0 |
| RNA-Seq evaluation | 92.44–95.25 |
| Genome annotation | |
| TEs (%) | 48.28 |
| LTR retrotransposons (%) | 42.10 |
| No. of predicted protein-coding genes | 24,448 |
| No. (%) of genes | |
| Assigned to pseudochromosomes | 24,209 (99.0) |
| Annotated to public database | 23,931 (97.9) |
| Annotated to GO database | 13,484 (55.2) |
| Duplicated by tandem duplications | 2,384 (9.8) |
CEG: core eukaryotic gene; LTR: long terminal repeat; TE: transposable element.