Table 2.
haplotype 1 structure | haplotype 2 structure | haplotype 1 GenBank accession | haplotype 2 GenBank accession | KPI haplotype prediction | haplotypes consistent w/ truth? | gene prediction accuracy |
---|---|---|---|---|---|---|
cA01~tA01 | cA01~tA01 | GU182344 | GU182340 | cA01~tA01+cA01~tA01 | Y | 100% |
cA01~tB01 | cA01~tA01 | KU645197 | GU182360 | cA01~tA01+cA01~tB01 or cA01~tB01+cA01~tB05 |
Y | 100% |
cB01~tA01 | cA01~tA01 | GU182351 | NC000019.10 | cA01~tA01+cB01~tA01 | Y | 100% |
cB01~tB01 | cB02~tA01 | GU182339 | GU182353 | 10 possibilities, including cB01~tB01+cB02~tA01 |
Y | 100% |
cB02~tA01 | cA01~tA01 | GU182341 | KP420442 | cA01~tA01+cB02~tA01 | Y | 100% |
cB02~tB01 | cA01~tA01 | GU182359 | KP420439 | 9 possibilities, including cA01~tA01+cB02~tB01 |
Y | 100% |
The first four columns detail the sequences from which the tests (n=6 haplotype-pairs) were generated. The fifth column is killer-cell immunoglobulin-like receptor probe interpretation’s (KPI’s) haplotype predictions, some of which are summarized for display.