Table 1.

Summary of the Genome-wide Prediction of nucleotide-binding-site leucine-rich repeat (NLR), receptor-like kinase (RLKs) and receptor-like proteins (RLPs) in Brassica Genome Assemblies.

Species.	Assemblies	NLR	RLK	RLP	Prediction Methods	References for RGA Prediction
B. rapa	BAC clones of B. rapa ssp. pekinensis cv. Chiifu	92	NA	NA	FGENESH program, BLAST and EST sequences	[42]
	Chiifu-401-42 v1	206	NA	NA	HMMER	[43]
	Chiifu-401-42 v1	204	NA	NA	BLAST and HMMsearch	[44]
	Chiifu-401-42 v1	249	NA	NA	MEME/MAST and InterProScan	[45]
	Chiifu-401-42 v1	202	NA	NA	HMMER for prediction and verified on the Pfam website.	[46]
	Chiifu-401-42 v1	NA	303	NA	Pfam database	[47]
B. oleracea	TO1000 v1	157	NA	NA	HMMER	[43]
	TO1000 v1	443	NA	NA	MEME/MAST and InterProScan	[45]
	TO1000 v1 and capitata homozygous line 02–12	146	NA	NA	HMMER for prediction and verified on the Pfam website.	[46]
	capitata homozygous line 02–12	138	NA	NA	HMMER	[48]
	TO1000 v2.1	439	822	159	The RGAugury pipeline	[5]
	Pangenome	556	901	213	The RGAugury pipeline	[5]
B. napus	Darmor-bzh v4.1	425	NA	NA	NA	[32]
	Darmor-bzh v4.1	641	NA	NA	MEME/MAST and InterProScan	[45]
	Darmor-bzh v4.1	464	NA	NA	HMMER for prediction and verified on the Pfam website.	[46]
	Darmor-bzh v4.1	NA	NA	184	MEME/MAST for prediction and verified with Pfam, TMHMM, Phobius and SMART searches	[49]
	Darmor-bzh v4.1	621	1497	273	The RGAugury pipeline	[50]
	Darmor-bzh v8.1	286	989	77
	Tapidor v6.3	208	680	223
	ZS11	566	1517	260
	Pangenome based on Darmor-bzh v8.1	503	1098	148	The RGAugury pipeline	[51]
B. juncea	v1.5	289	1225	228	InterProScan and the RGAugury pipeline	[52,53]
	v1.5 Yang_et_al_2016	315	1085	191	The RGAugury pipeline	[50]