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. 2020 Sep 16;153(11):114502. doi: 10.1063/5.0019056

TABLE I.

The performance of the original and the proposed new AM1-BCC atomic charges in combination with the GAFF2 parameters on the hydration free energies of neutral organic solutes in TIP3P water. Expt. stands for experimental; MSE stands for mean signed error; MUE stands for mean unsigned error; PI stands for predictive index; R stands for Pearson’s correlation coefficient; k and b stand for the slope and intercept values when fitting the calculated data (y) vs experimental data (x) with function y = kx + b.

Expt. data Original AM1-BCC New AM1-BCC (ABCG2)
Data range MSE MUE b MSE MUE b
Solutes No. (kcal/mol) (kcal/mol) (kcal/mol) PI R k (kcal/mol) (kcal/mol) (kcal/mol) PI R k (kcal/mol)
Non-cyclic alkanes 27 1.33 −0.27 0.34 0.56 0.61 0.40 1.27 −0.27 0.34 0.56 0.61 0.40 1.27
Cycloalkanes 9 1.80 −0.29 0.51 0.35 0.36 0.20 1.04 −0.29 0.51 0.35 0.36 0.20 1.04
Alkenes 23 1.92 0.71 0.71 0.79 0.80 0.74 1.02 0.10 0.26 0.88 0.86 1.02 0.07
Alkynes 5 0.87 0.59 0.59 0.43 0.60 0.27 0.80 0.01 0.15 0.95 0.96 0.49 0.16
Aromatic hydrocarbons 38 4.68 −0.80 0.81 0.96 0.98 1.36 −0.21 −0.18 0.32 0.97 0.98 1.20 0.15
Aliphatic chain + chloride 31 4.53 1.24 1.28 0.83 0.84 0.75 1.03 0.14 0.62 0.71 0.76 1.17 0.29
Aromatic ring + chloride 26 3.83 1.65 1.65 0.24 0.17 0.13 −0.31 0.22 0.55 0.89 0.84 0.81 −0.22
Aliphatic chain + bromide 14 3.17 0.93 1.02 0.73 0.83 0.34 0.57 −0.10 0.38 0.80 0.88 0.53 −0.36
Aromatic ring + bromide 4 0.99 0.53 0.53 0.08 0.46 0.47 −0.47 −0.12 0.12 1.00 0.99 1.02 −0.08
Hydrocarbon + iodide 10 2.76 −0.07 0.34 0.91 0.91 0.53 −0.39 −0.02 0.31 0.84 0.90 0.64 −0.27
Eithers 26 5.20 0.83 0.95 0.92 0.90 0.97 0.73 0.12 0.47 0.95 0.94 1.01 0.14
Alkyl alcohols 27 5.66 1.67 1.67 0.88 0.95 0.75 0.51 0.01 0.27 0.86 0.95 0.90 −0.45
Alkene + alcohols 4 0.59 2.13 2.13 0.10 0.05 0.09 −5.67 0.09 0.46 0.21 0.14 0.23 −2.97
Phenols 17 2.90 0.93 0.93 0.73 0.84 0.83 −1.25 −0.16 0.36 0.86 0.92 0.91 0.39
Ketones 21 4.35 0.27 0.37 0.97 0.94 0.74 −0.68 −0.01 0.32 0.96 0.93 0.82 −0.65
Aldehydes 16 2.20 0.02 0.44 0.90 0.81 1.16 0.53 −0.20 0.34 0.96 0.83 0.85 −0.68
Esters 41 7.82 −0.63 0.75 0.97 0.95 0.87 −1.11 −0.22 0.35 0.97 0.98 1.07 0.04
Amines 23 6.10 1.50 1.55 0.82 0.78 0.90 1.02 0.14 0.48 0.96 0.94 1.09 0.57
Anilines 8 4.02 0.34 0.47 0.85 0.89 0.80 −1.47 −0.08 0.20 0.98 0.98 0.95 −0.34
Pyrazines and pyridines 19 2.83 1.15 1.15 0.67 0.60 0.94 0.86 0.34 0.38 0.71 0.89 1.09 0.75
Nitriles 5 0.58 1.44 1.44 1.00 0.90 2.00 5.23 0.10 0.14 1.00 0.90 1.12 0.56
Nitro compounds 18 9.13 2.03 2.04 0.94 0.94 0.90 1.44 −0.11 0.37 0.98 0.98 0.94 −0.47
Nitrooxy compounds 10 6.52 2.18 2.18 0.92 0.95 0.58 0.45 0.07 0.42 0.96 0.97 0.88 −0.41
Amides 8 3.19 1.57 1.57 0.98 0.98 0.90 0.63 0.25 0.29 0.95 0.95 0.93 −0.46
Thioethers 7 0.62 1.18 1.18 0.42 0.60 0.62 0.61 −0.12 0.23 0.34 0.26 0.37 −1.06
Thiols 5 1.56 0.48 0.48 0.85 0.98 0.90 0.33 −0.06 0.20 0.85 0.97 0.66 −0.54
Sum 442 15.11 0.65 1.03 0.91 0.92 0.86 0.27 −0.03 0.37 0.98 0.98 0.98 −0.06