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Example of “Dockerfile”, a tool description, and a workflow description of kallisto workflow in CWL. a “Dockerfile” to build an RNA-Seq fastq data processing tool kallisto. b A CWL sub-workflow used in d. The workflow creates the index file for kallisto of the target transcript sequences with fasta format. c CWL sub-workflow used in d. The workflow processes RNA-Seq fastq files to generate their abundance of transcripts. d The main CWL workflow operates the sub-workflow in b and c
