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. 2020 Dec 10;11:6327. doi: 10.1038/s41467-020-19777-8

Fig. 5. An example of computing the score of a walk p (solid) relative to a carrying path pa = q1q2q3 (dashed).

Fig. 5

The path p forms a chain with the subpath q2 of pa, while subpaths q1 and q3 form hanging ends. We count the length of p and subtract lengths of the hanging ends. Thus, the score f(pap) = 4 − (1 + 1)2 = 0.