Table 3.
Quantitative trait loci for mineral nutrient concentrations and agronomic traits in RILs population.
| Trait | Environment | QTL name | Chromosome | Position | Confidence interval (cM) | LeftMarker | RightMarker | LOD | PVE(%) | Add |
|---|---|---|---|---|---|---|---|---|---|---|
| GZnC | E1 | QGZn.co-2B | 2B | 517 | 516.5–517.5 | 2303802 | 2275590 | 2.77 | 7.12 | 1.78 |
| E1 | QGZn.co-6B.1 | 6B | 278 | 277.5–278.5 | 1252668 | 100005882|F|0 | 3.56 | 4.20 | 1.38 | |
| E2 | QGZn.co-1B | 1B | 383 | 382.5–383.5 | 1244708 | 3028438|F|0 | 2.76 | 5.35 | −1.39 | |
| E2 | QGZn.co-3A | 3A | 100 | 99.5–100.5 | 3022261 | 3936326 | 3.56 | 5.18 | 2.45 | |
| E2 | QGZn.co-4B | 4B | 121 | 120.5–124 | 2277812 | 1242543 | 3.33 | 7.21 | 1.61 | |
| E2 | QGZn.co-7A | 7A | 286 | 285.5–288.5 | 5356706 | 5325178|F|0 | 5.47 | 7.83 | 1.81 | |
| E3 | QGZn.co-3B | 3B | 316 | 315.5–316.5 | 1002594|F|0 | 1103633 | 2.81 | 3.56 | −0.85 | |
| E3 | QGZn.co-3D | 3D | 125 | 123.5–126.5 | 1372776 | 100008980|F|0 | 2.84 | 2.71 | −2.65 | |
| E3 | QGZn.co-5A | 5A | 54 | 53.5–54.5 | 1244217 | 1272027|F|0 | 2.69 | 14.22 | 1.73 | |
| E3 | QGZn.co-6B.2 | 6B | 180 | 177.5–180.5 | 3941131 | 990183 | 3.36 | 4.07 | 2.81 | |
| GFeC | E1 | QGFe.co-2A | 2A | 147 | 146.5–147.5 | 4993302|F|0 | 3954215 | 4.12 | 3.00 | 2.77 |
| E2 | QGFe.co-1A | 1A | 182 | 179.5–184.5 | 100008269|F|0 | 1134239|F|0 | 2.56 | 2.23 | 0.67 | |
| E2 | QGFe.co-3B.1 | 3B | 200 | 199.5–200.5 | 1089107 | 1127875|F|0 | 3.65 | 14.56 | −1.71 | |
| E2 | QGFe.co-3D | 3D | 125 | 124.5–125.5 | 1372776 | 100008980|F|0 | 2.57 | 2.23 | −2.37 | |
| E2 | QGFe.co-4B | 4B | 123 | 120.5–124.0 | 1242543 | 1125612|F|0 | 5.33 | 4.41 | 0.93 | |
| E2 | QGFe.co-5A.1 | 5A | 45 | 43.5–46.5 | 14394095|F|0 | 4543804 | 2.66 | 2.10 | 0.73 | |
| E3 | QGFe.co-3B.2 | 3B | 263 | 262.5–263.5 | 1233878 | 4262223|F|0 | 3.14 | 5.62 | 2.67 | |
| E3 | QGFe.co-5A.2 | 5A | 97 | 96.5–97.5 | 1102433 | 988523 | 3.09 | 6.94 | 2.09 | |
| E3 | QGFe.co-6B | 6B | 295 | 292.5–295.5 | 5332918 | 7342703 | 3.21 | 6.22 | −0.73 | |
| GPC | E2 | QGpc.co-2A | 2A | 306 | 302.5–308.5 | 1267600 | 1138191 | 3.53 | 4.22 | 0.18 |
| E2 | QGpc.co-2B.2 | 2B | 517 | 516.5–518.5 | 2303802 | 2275590 | 2.76 | 10.84 | 0.28 | |
| E2 | QGpc.co-4A | 4A | 3 | 0–18.5 | 3942314 | 5323574|F|0 | 2.78 | 3.16 | 0.15 | |
| E3 | QGpc.co-2A | 2A | 306 | 302.5–308.5 | 1267600 | 1138191 | 2.77 | 5.76 | 0.17 | |
| E3 | QGpc.co-2B.1 | 2B | 310 | 304.5–312.5 | 1083804 | 1117983 | 3.09 | 6.33 | −0.17 | |
| HD | E1 | QHD.co-6D | 6D | 66 | 64.5–68.5 | 1209290 | 100008884|F|0 | 3.78 | 7.97 | −2.36 |
| E2 | QHD.co-1A | 1A | 93 | 92.5–93.5 | 994164 | 3023688 | 4.02 | 7.99 | 5.03 | |
| E2 | QHD.co-3B | 3B | 344 | 343.5–344.5 | 1152422 | 3936319 | 2.68 | 5.21 | −3.27 | |
| E2 | QHD.co-6D | 6D | 67 | 65.5–68.5 | 100008884|F|0 | 1237294|F|0 | 3.12 | 6.40 | −1.04 | |
| E3 | QHD.co-1B | 1B | 332 | 331.5–332.5 | 7940846|F|0 | 3950917 | 2.58 | 5.27 | 1.38 | |
| E3 | QHD.co-6D | 6D | 67 | 65.5–68.5 | 100008884|F|0 | 1237294|F|0 | 4.86 | 6.63 | −1.68 | |
| MD | E1 | QMD.co-2B | 2B | 41 | 40.5–41.5 | 1023861 | 7169514 | 3.24 | 3.89 | −6.55 |
| E1 | QMD.co-3B.1 | 3B | 202 | 201.5–202.5 | 1090626 | 1718514 | 3.08 | 3.21 | −2.91 | |
| E1 | QMD.co-6B | 6B | 170 | 169.5–170.5 | 5583068 | 1120240 | 3.85 | 7.56 | 3.43 | |
| E1 | QMD.co-6D | 6D | 67 | 65.5–68.5 | 100008884|F|0 | 1237294|F|0 | 4.96 | 4.24 | −1.11 | |
| E1 | QMD.co-7D | 7D | 194 | 190.5–197.5 | 3950217 | 2372642 | 3.49 | 2.66 | −0.78 | |
| E2 | QMD.co-3B.2 | 3B | 344 | 343.5–344.5 | 1152422 | 3936319 | 8.07 | 12.28 | −3.62 | |
| E2 | QMD.co-4A | 4A | 154 | 153.5–155.5 | 4398288 | 1228828|F|0 | 6.10 | 6.20 | 0.73 | |
| E2 | QMD.co-6D | 6D | 67 | 65.5–67.5 | 100008884|F|0 | 1237294|F|0 | 5.32 | 5.94 | −0.80 | |
| E2 | QMD.co-7B | 7B | 78 | 77.5–78.5 | 987928 | 1052236 | 2.72 | 3.66 | −1.28 | |
| E3 | QMD.co-2B | 2B | 41 | 40.5–41.5 | 1023861 | 7169514 | 4.09 | 4.86 | −6.13 | |
| E3 | QMD.co-3B.2 | 3B | 344 | 343.5–344.5 | 1152422 | 3936319 | 3.02 | 5.75 | −3.37 | |
| E3 | QMD.co-6D | 6D | 67 | 65.5–67.5 | 100008884|F|0 | 1237294|F|0 | 7.94 | 7.40 | −1.23 | |
| PH | E1 | QPH.co-2A | 2A | 34 | 33.5–35.5 | 1010905 | 1109890 | 2.79 | 5.12 | −1.01 |
| E2 | QPH.co-3B.1 | 3B | 130 | 128.5–130.5 | 4407876 | 1092573 | 4.46 | 5.74 | −1.53 | |
| E2 | QPH.co-3B.2 | 3B | 160 | 159.5–162.5 | 3028449 | 3028616|F|0 | 6.52 | 8.78 | −1.89 | |
| E1 | QPH.co-3B.3 | 3B | 197 | 196.5–197.5 | 5009687|F|0 | 3937454 | 2.72 | 9.94 | 1.41 | |
| TKW | E1 | QTKW.co-1A | 1A | 132 | 131.5–132.5 | 1160755 | 1165294 | 2.53 | 13.56 | −1.59 |
| E1 | QTKW.co-2A | 2A | 291 | 288.5–292.5 | 3033455 | 2288824 | 5.97 | 6.27 | −1.10 | |
| E1 | QTKW.co-2B | 2B | 524 | 523.5–524.5 | 3939679 | 1234002 | 5.03 | 5.12 | 1.02 | |
| E1 | QTKW.co-3B | 3B | 303 | 302.5–303.5 | 988768 | 1099934 | 3.00 | 3.36 | 3.55 | |
| E1 | QTKW.co-5B.1 | 5B | 287 | 281.5–294.5 | 100005844|F|0 | 2322388 | 2.91 | 4.93 | −1.06 | |
| E1 | QTKW.co-5B.2 | 5B | 344 | 343.5–344.5 | 1165997 | 5323590|F|0 | 4.23 | 5.04 | 2.23 | |
| E1 | QTKW.co-6D.1 | 6D | 61 | 51.5–63.5 | 4911065|F|0 | 1209290 | 2.73 | 3.24 | −0.79 | |
| E1 | QTKW.co-6D.2 | 6D | 68 | 66.5–69.5 | 100008884|F|0 | 1237294|F|0 | 4.47 | 5.99 | 1.16 | |
| E2 | QTKW.co-2B | 2B | 524 | 523.5–525.5 | 3939679 | 1234002 | 6.80 | 12.30 | 1.55 | |
| E2 | QTKW.co-5A | 5A | 220 | 214.5–225.5 | 100003298|F|0 | 1165921 | 3.65 | 6.36 | −1.07 | |
| E2 | QTKW.co-6D.2 | 6D | 67 | 65.5–69.5 | 100008884|F|0 | 1237294|F|0 | 3.73 | 7.06 | 1.29 | |
| E3 | QTKW.co-2B | 2B | 524 | 523.5–524.5 | 3939679 | 1234002 | 7.38 | 13.22 | 1.48 | |
| E3 | QTKW.co-5A | 5A | 220 | 214.5–225.5 | 100003298|F|0 | 1165921 | 3.75 | 6.42 | −0.99 | |
| E3 | QTKW.co-6D.2 | 6D | 67 | 65.5–69.5 | 100008884|F|0 | 1237294|F|0 | 3.73 | 7.01 | 1.18 |
Note: LOD likelihood of odds ratio for genetic effects, R2 total percentage of phenotypic variation explained (PVE) by each QTL, Add the additive effect.