Table 2.
Yau–Hausdorff distances, RMSD values and TM-score values between the empirically determined and predicted structures of the four proteins with the same amino acid sequence using our method and RaptorX method.
| Protein ID | 1a29 | 1cfd | 1cll | 2bcx |
|---|---|---|---|---|
| Yau–Hausdorff distance by our method | 1.901 | 2.574 | 1.124 | 2.743 |
| Yau–Hausdorff distance by RaptorX method | 5.830 | 2.654 | 4.295 | 2.899 |
| Yau–Hausdorff distance by I-TASSER method | 1.925 | 6.530 | 8.441 | 3.170 |
| RMSD by our method | 3.704 | 4.786 | 3.330 | 5.821 |
| RMSD by RaptorX method | 14.929 | 6.782 | 11.620 | 12.221 |
| RMSD by I-TASSER method | 4.655 | 4.849 | 3.982 | 9.288 |
| TM-score by our method | 0.596 | 0.631 | 0.718 | 0.557 |
| TM-score by RaptorX method | 0.321 | 0.496 | 0.324 | 0.328 |
| TM-score by I-TASSER method | 0.372 | 0.397 | 0.428 | 0.460 |