Table 4.
Transcription factor (TF) binding sites detected in the polymorphic indel between the two parental lines and NIL families for GS-B2 gene.
| TFBSs | Hit Sequence | Strand | Corresponding TF (Gene ID) | Description |
|---|---|---|---|---|
| EIN3; EIL | aTGTATcta | + | AT2G27050 | Ethylene insensitive 3 |
| tagATACAt | − | |||
| tagATACAt | − | |||
| ggATGTAtcta | − | Os09g0490200 | Ethylene insensitive 3 | |
| tagaTACATcc | + | |||
| tagaTACATcc | + | |||
| gaTGTATcta | − | AT5G21120 | Ethylene insensitive 3 | |
| tagATACAtc | + | |||
| tagATACAtc | + | |||
| NAC; NAM | TACGT | − | AT1G01720 | No apical meristem (NAM) protein |
| AT-Hook | aAAATAc | + | Os01g0835600 | AT hook motif |
| GATA; tify | GGATG | + | AT1G51600 | GATA zinc finger |
| TATCT | − | |||
| AGATA | + | |||
| CATCC | − | |||
| GTATC | − | |||
| GATAC | + | |||
| bZIP | TACGT | − | AT3G54620 | bZIP transcription factor |
| ACGTC | + | |||
| ZF-HD | ATTAC | + | AT1G75240 | ZF-HD protein dimerization region |
| GTAAT | − | |||
| AP2; ERF | ATCTA | + | AT3G14230 | AP2 domain |
| TAGAT | − | |||
| B3; ARF | TGTCTc | + | AT1G19220 | auxin response factor |
| gAGACA | − | |||
| SBP | GTACT | + | AT2G33810 | squamosa promoter binding protein-like 3 |
| AGTAC | − |