Table 1.
List of the species used in the study and information of their genome assemblies
| Organism name | Common name | Assembly id | Assembly date | UCSC annotation databasea | Annotation date |
|---|---|---|---|---|---|
| Homo sapiens | Human | hg38 | Dec 2013 | knownGene | Oct 2019 |
| Pan troglodytes | Chimpanzee | panTro5 | May 2016 | ensGene | Feb 2019 |
| Macaca mulatta | Rhesus macaque | rheMac8 | Nov 2015 | ensGene | Feb 2019 |
| Macaca fascicularis | Crab-eating macaque | macFas5 | Jun 2013 | ensGene | Feb 2019 |
| Papio anubis | Olive baboon | papAnu4 | Apr 2017 | ensGene | Jun 2019 |
| Chlorocebus sabaeus | Green monkey | chlSab2 | Mar 2014 | ensGene | Feb 2019 |
| Callithrix jacchus | Common marmoset | calJac3 | Mar 2009 | ensGene | Nov 2016 |
| Mus musculus | Mouse | mm10 | Dec 2011 | knownGene [ref] | Oct 2019 |
| Rattus norvegicus | Rat | rn6 | Jul 2014 | ensGene | Feb 2019 |
| Heterocephalus glaber | Naked mole-rat | hetGla2 | Jan 2012 | ensGene | Feb 2019 |
| Canis lupus familiaris | Dog | canFam3 | Sep 2011 | ensGene | Feb 2019 |
| Felis catus | Cat | felCat8 | Nov 2014 | ensGene | Aug 2018 |
| Bos taurus | Cow | bosTau9 | Apr. 2018 | RefGene | Jun 2019 |
| Ovis aries | Sheep | oviAri4 | Nov 2015 | RefGene | Oct 2018 |
| Sus scrofa | Pig | susScr11 | Feb 2017 | ensGene | Feb 2019 |
| Monodelphis domestica | Gray short-tailed opossum | monDom5 | Oct 2006 | ensGene | Feb 2019 |
a refGene consists of RefSeq gene models in the UCSC, ensGene is a dataset of Ensembl gene predictions, and knownGene contains protein coding genes based on proteins from UniProtKB and their corresponding mRNAs from GenBank