Table 4. Gene flow and genetic differentiation indices between the four HAV probable clusters estimated from VP3/VP1gene sequences.
Pop 1 | Pop 2 | Fst | Nm | Kxy | Dxy | Gst | Da |
---|---|---|---|---|---|---|---|
Cluster-I | Cluster-II | 0.46 | 0.12 | 4.10 | 0.021 | 0.098 | 0.009 |
Cluster -I | Cluster–III | 0.52 | 0.12 | 4.75 | 0.024 | 0.108 | 0.013 |
Cluster-I | Cluster-IV | 0.52 | 0.12 | 4.61 | 0.023 | 0.073 | 0.011 |
Cluster-II | Cluster-III | 0.52 | 0.12 | 2.41 | 0.012 | 0.147 | 0.007 |
Cluster-II | Cluster-IV | 0.53 | 0.12 | 2.45 | 0.012 | 0.135 | 0.007 |
Cluster-III | Cluster-IV | 0.63 | 0.11 | 3.19 | 0.016 | 0.136 | 0.011 |
Fst: Wright’s F-statistics, pairwise genetic distance [22], Nm: Gene flow and population migration among populations [22, 23], Kxy: Average proportion of nucleotide differences between populations. Dxy: The average number of nucleotide substitutions per site between populations [20], Da: The number of net nucleotide substitutions per site between populations [20], Gst: Genetic differentiation index based on the frequency of haplotypes [24].