TABLE 2.
Characteristics of 53 newly developed indel markers.
| Marker ID | Region | MAF | Na | PIC | Ho | He |
| ChrInDeL01 | exon_variant | 0.4500 | 6 | 0.6452 | 0.6 | 0.7045 |
| ChrInDeL02 | 3_prime_UTR_variant | 0.7333 | 3 | 0.3468 | 0.3333 | 0.4136 |
| ChrInDeL03 | 3_prime_UTR_variant | 0.6333 | 4 | 0.4599 | 0.1333 | 0.5311 |
| ChrInDeL04 | 5_prime_UTR_variant | 0.4667 | 3 | 0.5564 | 0.6667 | 0.6418 |
| ChrInDeL05 | disruptive_inframe_deletion | 0.7833 | 5 | 0.3535 | 0.2333 | 0.378 |
| ChrInDeL06 | disruptive_inframe_insertion | 0.4167 | 6 | 0.7144 | 0.7333 | 0.7593 |
| ChrInDeL07 | downstream_gene_variant | 0.5500 | 3 | 0.3956 | 0.8667 | 0.5181 |
| ChrInDeL08 | downstream_gene_variant | 0.7000 | 3 | 0.3929 | 0.1333 | 0.4588 |
| ChrInDeL09 | downstream_gene_variant | 0.4833 | 4 | 0.5016 | 0.1667 | 0.5972 |
| ChrInDeL10 | downstream_gene_variant | 0.4000 | 6 | 0.6777 | 0.8333 | 0.735 |
| ChrInDeL11 | frameshift_variant&start_lost | 0.3000 | 7 | 0.7883 | 0.1667 | 0.8266 |
| ChrInDeL12 | frameshift_variant&start_lost | 0.3500 | 8 | 0.7233 | 0.7 | 0.7712 |
| ChrInDeL13 | frameshift_variant&start_lost | 0.5000 | 8 | 0.6475 | 0.5 | 0.6949 |
| ChrInDeL14 | frameshift_variant&start_lost | 0.6333 | 5 | 0.5117 | 0.3 | 0.5605 |
| ChrInDeL15 | frameshift_variant&stop_gained | 0.5167 | 2 | 0.3747 | 0.9 | 0.5079 |
| ChrInDeL16 | frameshift_variant&stop_gained | 0.9667 | 2 | 0.0624 | 0 | 0.0655 |
| ChrInDeL17 | intergenic_region | 0.6667 | 4 | 0.4011 | 0.2667 | 0.4819 |
| ChrInDeL18 | intergenic_region | 0.5833 | 4 | 0.4311 | 0.8333 | 0.5328 |
| ChrInDeL19 | intergenic_region | 0.5333 | 3 | 0.5258 | 0.6 | 0.6079 |
| ChrInDeL20 | intergenic_region | 0.3667 | 7 | 0.7397 | 0.6333 | 0.7842 |
| ChrInDeL21 | intergenic_region | 0.8333 | 2 | 0.2392 | 0.2 | 0.2825 |
| ChrInDeL22 | intergenic_region | 0.5833 | 4 | 0.5043 | 0.7 | 0.578 |
| ChrInDeL23 | intergenic_region | 0.5833 | 4 | 0.5205 | 0.5 | 0.5881 |
| ChrInDeL24 | intergenic_region | 0.8667 | 2 | 0.2044 | 0.2667 | 0.235 |
| ChrInDeL25 | intergenic_region | 0.9167 | 3 | 0.1500 | 0.1 | 0.1588 |
| ChrInDeL26 | intergenic_region | 0.5000 | 5 | 0.5297 | 0.9667 | 0.6153 |
| ChrInDeL27 | intergenic_region | 0.5000 | 6 | 0.6101 | 0.7333 | 0.6706 |
| ChrInDeL28 | intron_variant | 0.6667 | 4 | 0.4416 | 0.2667 | 0.504 |
| ChrInDeL29 | intron_variant | 0.6167 | 3 | 0.4686 | 0.5 | 0.5441 |
| ChrInDeL30 | intron_variant | 0.9500 | 2 | 0.0905 | 0.1 | 0.0966 |
| ChrInDeL31 | intron_variant | 0.5000 | 7 | 0.5718 | 0.3333 | 0.6429 |
| ChrInDeL32 | intron_variant | 0.9167 | 2 | 0.1411 | 0.0333 | 0.1554 |
| ChrInDeL33 | intron_variant | 0.8833 | 2 | 0.1849 | 0.2333 | 0.2096 |
| ChrInDeL34 | intron_variant | 0.5333 | 4 | 0.4199 | 0.9 | 0.5362 |
| ChrInDeL35 | intron_variant | 0.3000 | 5 | 0.7108 | 0 | 0.7661 |
| ChrInDeL36 | intron_variant | 0.4333 | 4 | 0.6019 | 0.1333 | 0.678 |
| ChrInDeL37 | intron_variant | 0.6667 | 4 | 0.4833 | 0.3333 | 0.5266 |
| ChrInDeL38 | intron_variant | 0.4667 | 4 | 0.4644 | 0.9667 | 0.5712 |
| ChrInDeL39 | start_lost&conservative_inframe_deletion | 0.4500 | 6 | 0.5272 | 0.9333 | 0.6164 |
| ChrInDeL40 | start_lost&conservative_inframe_deletion | 0.9333 | 3 | 0.1213 | 0.0667 | 0.1282 |
| ChrInDeL41 | start_lost&conservative_inframe_deletion | 0.9500 | 3 | 0.0936 | 0.0333 | 0.0977 |
| ChrInDeL42 | stop_gained&conservative_inframe_insertion | 0.4833 | 5 | 0.5026 | 1 | 0.5977 |
| ChrInDeL43 | stop_gained&conservative_inframe_insertion | 0.6500 | 3 | 0.3902 | 0.6333 | 0.4842 |
| ChrInDeL44 | upstream_gene_variant | 0.4000 | 3 | 0.5837 | 0.6667 | 0.6689 |
| ChrInDeL45 | upstream_gene_variant | 0.6833 | 3 | 0.4030 | 0.0333 | 0.474 |
| ChrInDeL46 | upstream_gene_variant | 0.5667 | 5 | 0.5572 | 0.1 | 0.6164 |
| ChrInDeL47 | upstream_gene_variant | 0.5500 | 3 | 0.5246 | 0.1 | 0.6028 |
| ChrInDeL48 | upstream_gene_variant | 0.4667 | 3 | 0.5564 | 0.0667 | 0.6418 |
| ChrInDeL49 | upstream_gene_variant | 0.7667 | 4 | 0.3697 | 0.4333 | 0.3994 |
| ChrInDeL50 | upstream_gene_variant | 0.6500 | 3 | 0.4425 | 0.4 | 0.5136 |
| ChrInDeL51 | upstream_gene_variant | 0.5000 | 3 | 0.3990 | 1 | 0.5249 |
| ChrInDeL52 | upstream_gene_variant | 0.7500 | 4 | 0.3847 | 0.5 | 0.4198 |
| ChrInDeL53 | upstream_gene_variant | 0.5167 | 2 | 0.3747 | 0.9667 | 0.5079 |