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. 2020 Dec 14;52:73. doi: 10.1186/s12711-020-00593-z

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Localization of putatively misplaced candidates on BTA26. a Heatmap of recombination rate with misplaced candidates. The selected window of 80 SNPs ranges from 23.08 to 27.53 Mbp. A single SNP (on the top) and a cluster of four SNPs (in the middle) are misplaced in the underlying genome assembly. Missing values are filled with white color. b Visualizes the inflated LD between physically distant loci. A cluster of inflated LD appears between markers mapped as far as ~ 25 Mbp from each other. Two SNPs ARS-BFGL-NGS-119202 and ARS-BFGL-NGS-58121 were mainly involved in shaping the outlaying pattern of LD. c The genetic distances of SNPs approximated with the likelihood-based approach before (grey) and after removing misplaced candidates (black) by physical distance