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. 2020 Nov 12;124(47):10617–10631. doi: 10.1021/acs.jpcb.0c05508

Table 4. Characteristic Structures Obtained by Free-Energy Landscape Partition of REMD Simulation 1 at T = 300.38 Ka.

    interchain interaction energy (kcal/mol)
  secondary structure (%)
cluster population of cluster (%) electrostatic van der Waals pore radius (Å) β helix turn coil
S1 11.86 –309.15 –142.93 N/A 24.60 6.35 19.84 49.21
S2 8.93 –276.09 –129.70 N/A 23.02 0.00 24.60 52.38
S3 8.74 –299.18 –143.11 1.82 (0.25) 20.64 6.35 22.22 50.79
S4 8.01 –202.60 –104.30 N/A 22.22 8.73 28.57 40.48
S5 7.53 –217.78 –143.59 N/A 24.61 0.00 22.22 53.17
S6 6.84 –240.83 –168.83 1.93 (0.43) 34.92 3.18 33.33 28.57
S7 6.50 –209.34 –110.78 N/A 24.60 2.38 27.78 45.24
S8 6.41 –351.66 –141.56 N/A 26.19 4.76 25.40 43.65
S9 6.40 –324.57 –136.95 N/A 31.75 7.94 26.98 33.33
S10 5.67 –201.56 –85.13 N/A 20.64 2.38 17.46 59.52
S11 5.46 –203.38 –131.23 2.05 (0.45) 34.13 0.00 26.98 38.89
S12 5.37 –406.86 –162.50 1.81 (0.25) 17.46 4.76 19.84 57.94
S13 5.22 –171.73 –128.02 2.16 (0.56) 32.54 7.94 14.29 45.24
S14 3.83 –388.68 –148.07 1.82 (0.23) 29.37 2.38 26.98 41.27
S15 3.21 –92.53 –124.36 N/A 27.78 6.34 14.29 51.59
a

N/A in pore radius represents no determined pore. Errors (within parentheses) are standard deviations.