Table 4. Characteristic Structures Obtained by Free-Energy Landscape Partition of REMD Simulation 1 at T = 300.38 Ka.
interchain
interaction energy (kcal/mol) |
secondary
structure (%) |
|||||||
---|---|---|---|---|---|---|---|---|
cluster | population of cluster (%) | electrostatic | van der Waals | pore radius (Å) | β | helix | turn | coil |
S1 | 11.86 | –309.15 | –142.93 | N/A | 24.60 | 6.35 | 19.84 | 49.21 |
S2 | 8.93 | –276.09 | –129.70 | N/A | 23.02 | 0.00 | 24.60 | 52.38 |
S3 | 8.74 | –299.18 | –143.11 | 1.82 (0.25) | 20.64 | 6.35 | 22.22 | 50.79 |
S4 | 8.01 | –202.60 | –104.30 | N/A | 22.22 | 8.73 | 28.57 | 40.48 |
S5 | 7.53 | –217.78 | –143.59 | N/A | 24.61 | 0.00 | 22.22 | 53.17 |
S6 | 6.84 | –240.83 | –168.83 | 1.93 (0.43) | 34.92 | 3.18 | 33.33 | 28.57 |
S7 | 6.50 | –209.34 | –110.78 | N/A | 24.60 | 2.38 | 27.78 | 45.24 |
S8 | 6.41 | –351.66 | –141.56 | N/A | 26.19 | 4.76 | 25.40 | 43.65 |
S9 | 6.40 | –324.57 | –136.95 | N/A | 31.75 | 7.94 | 26.98 | 33.33 |
S10 | 5.67 | –201.56 | –85.13 | N/A | 20.64 | 2.38 | 17.46 | 59.52 |
S11 | 5.46 | –203.38 | –131.23 | 2.05 (0.45) | 34.13 | 0.00 | 26.98 | 38.89 |
S12 | 5.37 | –406.86 | –162.50 | 1.81 (0.25) | 17.46 | 4.76 | 19.84 | 57.94 |
S13 | 5.22 | –171.73 | –128.02 | 2.16 (0.56) | 32.54 | 7.94 | 14.29 | 45.24 |
S14 | 3.83 | –388.68 | –148.07 | 1.82 (0.23) | 29.37 | 2.38 | 26.98 | 41.27 |
S15 | 3.21 | –92.53 | –124.36 | N/A | 27.78 | 6.34 | 14.29 | 51.59 |
N/A in pore radius represents no determined pore. Errors (within parentheses) are standard deviations.