Antibodies |
rat anti-somatostatin |
Millipore |
MAB354 |
sheep anti-neuropeptideY |
Abcam |
ab6173 |
rabbit anti-proCCK |
Frontier Institute |
CCK-pro-Rb-Af350 |
chicken anti-parvalbumin |
Gift from Susan Brenner-Morton |
|
rabbit anti-SATB1 |
Abcam |
ab70004 |
guinea pig anti-calretinin |
Swant |
CRgp7 |
rabbit anti-VIP |
Immunostar |
20077 |
rat anti-M2R |
Millipore |
MAB367 |
donkey anti-chicken DyLight 405 |
Jackson Immunoresearch |
703-475-155 |
donkey anti-rabbit DyLight 405 |
Jackson Immunoresearch |
711-475-152 |
donkey anti-guinea pig Rhodamine Red X |
Jackson Immunoresearch |
706-295-148 |
donkey anti-rat Alexa 568 |
Abcam |
ab175475 |
donkey anti-sheep F(ab)2 Alexa 647 |
Jackson Immunoresearch |
713-606-147 |
donkey anti-rabbit Alexa 647 |
Jackson Immunoresearch |
711-605-152 |
donkey anti-rat Alexa 647 |
Jackson Immunoresearch |
712-605-153 |
Bacterial and Virus Strains |
rAAV1-Syn-FLEX-GCaMP6f-WPRE-Sv40 |
UPenn Viral Vector Core |
N/A |
Experimental Models: Organisms/Strains |
VGAT-IRES-Cre |
The Jackson Laboratory |
Jax stock: 016962 |
VIP-IRES-Cre |
The Jackson Laboratory |
Jax stock: 010908 |
Software and Algorithms |
Python 2.7 |
Python |
https://www.python.org |
FIJI (ImageJ) |
NIH |
http://fiji.sc |
Scikit-Learn |
Pedregosa et al., 2011 |
http://scikit-learn.org |
SIMA |
Kaifosh et al., 2014 |
https://github.com/losonczylab/sima |
FISSA |
Keemink et al., 2018 |
https://github.com/rochefort-lab/fissa |
Machine-learning classification of subtypes |
This paper |
https://github.com/losonczylab/Geiller_Vancura_Neuron2020 |