Table 3.
SSR distribution.
| High density SNP map | SSR markers | Cynoglossus Chromosomes | LD genetic map | ||
|---|---|---|---|---|---|
| This study | LD genetic map | Total | |||
| SseLG01 | 11 | 3 | 14 | chr3,chr20 | LG21,LG27 |
| SseLG02 | 6 | 6 | 12 | chr14,chr16 | LG17,LG18,LG25 |
| SseLG03 | 5 | 5 | 10 | chr1, chr8, chrZ | LG7 |
| SseLG04 | 4 | 8 | 12 | chr11, chrZ | LG2 |
| SseLG05 | 8 | 7 | 15 | chrZ | LG4 |
| SseLG06 | 7 | 10 | 17 | chr9 | LG1 |
| SseLG07 | 4 | 15 | 19 | chr5 | LG3,LG26 |
| SseLG08 | 5 | 4 | 9 | chr4 | LG22,LG24 |
| SseLG09 | 5 | 5 | 10 | chr13 | LG16,LG20 |
| SseLG10 | 4 | 6 | 10 | chr6 | LG6 |
| SseLG11 | 3 | 5 | 8 | chr10 | LG10 |
| SseLG12 | 6 | 8 | 14 | chr15 | LG13,LG23 |
| SseLG13 | 4 | 0 | 4 | chr19 | – |
| SseLG14 | 4 | 8 | 12 | chr2 | LG8 |
| SseLG15 | 5 | 4 | 9 | chr12 | LG12 |
| SseLG16 | 4 | 5 | 9 | chr1 | LG15 |
| SseLG17 | 4 | 6 | 10 | chr7 | LG11 |
| SseLG18 | 5 | 2 | 7 | chr8 | LG19 |
| SseLG19 | 4 | 7 | 11 | chr17 | LG1,LG14 |
| SseLG20 | 4 | 3 | 7 | chr18 | LG5 |
| SseLG21 | 3 | 4 | 7 | chr14 | LG9 |
| Unplaced | 3 | 5 | 8 | – | |
| Total | 108 | 126 | 234 | ||
Markers are groups by the 21 linkage groups (SseLG) of the high-density SNP genetic map. The number of SSRs of this study and those from Low-density (LD) genetic linkage map (Molina-Luzon et al., 2015) are indicated. The location of markers in C. semilaevis genome by blasting the scaffold containing the SSR marker and the LG in the LD genetic map are indicated.