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. 2020 Dec 2;8:588289. doi: 10.3389/fchem.2020.588289

Table 3.

Calculated (for methyl Chl-a) and observed (for Chl-a) reorganization energies (in cm−1) for y-polarized Franck-Condon allowed Qy absorption (λA) and emission (λE), compared to analogous results for Pheo-a (Rätsep et al., 2019b) and BChl-a (Rätsep et al., 2011).

Method Mg Coord. Pheo-a BChl-a Chl-a
λA λE λA λE λA λE
Obs.j1 4.5 K TEA ΔFLN and SEF - 317 395
Obs.j1 low res. 4.5 K TEA - 355 402
Obs.j2 1.7 K EtOH/MeOH low res. MCD - 424
Obs.j3 4 K TEA ΔFLN 6 219
Obs.j3,j4 5 K HB 5 378
Obs.j3 295 K TEA 5 335 185
Obs.j3 4.5 K TEA low res. 6 196 236
Obs.j3 4.5 K TEA low res. −5 - - 335 260
Obs. 5 K TEA, low res. 5 ~300h 458
Obs. 5 K TEA, ΔFLN 5 370
Obs. 295 K TEA, low res. 5 413
Obs.j2 4 K wet ether FE 5f 262e
Obs. 295 K wet ether, low res. 5 264i 438
Obs.j5 4 K 1-propanol ΔFLN 6 650
Obs.j2 4 K 1-propanol low res. 6 ~420b ~650a
Obs.j5 295 K 1-propanol low res. 5 ~490c 492
Obs.j2,j6 PS-I-200 HB 5 547g
Obs.j2,j7 WSCP HB 5 645g
CAM-B3LYP/6-31G* from calc. energies 4 1,214d,j1 481j1 350j3 210j3 607j2 517j2
CAM-B3LYP/6-31G* from scaled frequencies 4 300j3 200j3 567 492
B3LYP/6-31G* from calc. energies 4 184j1 165j1 130j3 150j3 243 245
MN15/6-31G* from calc. energies 4 493j1 282j1 184 167 390 358
ωB97XD/6-31G* from calc. energies 4 1,609d,j1 594j1 310j3 1,140j3 713 606
a

Observed spectrum (Rätsep et al., 2009a) is deconvoluted (see Figure 5) into two bands representing the dominant 6-coordinate species (85%) and a secondary 5-coordinate one using the spectral bandshape from ΔFLN, indicating that the ΔFLN results accurately depict traditional low-resolution data.

b

Observed absorption and MCD spectra are fitted to a model depicting 85% 6-coordinate species, scaling the bandshape observed in wet ether by FE (see Figure 6) (Reimers et al., 2013).

c

Very crude estimate for the 5-coordinate species assuming that the x polarized absorption commences is located 1,000 cm-1 above Qx origin and has the same intensity as that observed for the 6-coordinate species.

d

One poorly represented mode depicting aromaticity in Qy involving interactions with nitrogen lone-pair orbitals; neglecting this results become CAM-B3LYP 465 cm-1, ωB97XD 475 cm−1.

e

After removal of Qx using full-quantum spectral simulations (Reimers et al., 2013).

f

Ligand is water (Reimers et al., 2014).

g

From hole-burning (HB) data, but qualitatively unreliable owing to baseline uncertainties (Reimers et al., 2013).

h

After approximate removal of Qx band using the bandshape deduced in wet ether (Reimers et al., 2013).

i

From analytical inversion (Reimers and Krausz, 2014) of absorption and MCD data (Umetsu et al., 1999).

j

References: 1- (Rätsep et al., 2019b), 2- (Reimers et al., 2013), 3- (Rätsep et al., 2011), 4- (Zazubovich et al., 2001), 5- (Rätsep et al., 2009a), 6- (Gillie et al., 1989), 7- (Hughes et al., 2010).