Table 3.
Calculated (for methyl Chl-a) and observed (for Chl-a) reorganization energies (in cm−1) for y-polarized Franck-Condon allowed Qy absorption (λA) and emission (λE), compared to analogous results for Pheo-a (Rätsep et al., 2019b) and BChl-a (Rätsep et al., 2011).
| Method | Mg Coord. | Pheo-a | BChl-a | Chl-a | |||
|---|---|---|---|---|---|---|---|
| λA | λE | λA | λE | λA | λE | ||
| Obs.j1 4.5 K TEA ΔFLN and SEF | - | 317 | 395 | ||||
| Obs.j1 low res. 4.5 K TEA | - | 355 | 402 | ||||
| Obs.j2 1.7 K EtOH/MeOH low res. MCD | - | 424 | |||||
| Obs.j3 4 K TEA ΔFLN | 6 | 219 | |||||
| Obs.j3,j4 5 K HB | 5 | 378 | |||||
| Obs.j3 295 K TEA | 5 | 335 | 185 | ||||
| Obs.j3 4.5 K TEA low res. | 6 | 196 | 236 | ||||
| Obs.j3 4.5 K TEA low res. | −5 | - | - | 335 | 260 | ||
| Obs. 5 K TEA, low res. | 5 | ~300h | 458 | ||||
| Obs. 5 K TEA, ΔFLN | 5 | 370 | |||||
| Obs. 295 K TEA, low res. | 5 | 413 | |||||
| Obs.j2 4 K wet ether FE | 5f | 262e | |||||
| Obs. 295 K wet ether, low res. | 5 | 264i | 438 | ||||
| Obs.j5 4 K 1-propanol ΔFLN | 6 | 650 | |||||
| Obs.j2 4 K 1-propanol low res. | 6 | ~420b | ~650a | ||||
| Obs.j5 295 K 1-propanol low res. | 5 | ~490c | 492 | ||||
| Obs.j2,j6 PS-I-200 HB | 5 | 547g | |||||
| Obs.j2,j7 WSCP HB | 5 | 645g | |||||
| CAM-B3LYP/6-31G* from calc. energies | 4 | 1,214d,j1 | 481j1 | 350j3 | 210j3 | 607j2 | 517j2 |
| CAM-B3LYP/6-31G* from scaled frequencies | 4 | 300j3 | 200j3 | 567 | 492 | ||
| B3LYP/6-31G* from calc. energies | 4 | 184j1 | 165j1 | 130j3 | 150j3 | 243 | 245 |
| MN15/6-31G* from calc. energies | 4 | 493j1 | 282j1 | 184 | 167 | 390 | 358 |
| ωB97XD/6-31G* from calc. energies | 4 | 1,609d,j1 | 594j1 | 310j3 | 1,140j3 | 713 | 606 |
Observed spectrum (Rätsep et al., 2009a) is deconvoluted (see Figure 5) into two bands representing the dominant 6-coordinate species (85%) and a secondary 5-coordinate one using the spectral bandshape from ΔFLN, indicating that the ΔFLN results accurately depict traditional low-resolution data.
Observed absorption and MCD spectra are fitted to a model depicting 85% 6-coordinate species, scaling the bandshape observed in wet ether by FE (see Figure 6) (Reimers et al., 2013).
Very crude estimate for the 5-coordinate species assuming that the x polarized absorption commences is located 1,000 cm-1 above Qx origin and has the same intensity as that observed for the 6-coordinate species.
One poorly represented mode depicting aromaticity in Qy involving interactions with nitrogen lone-pair orbitals; neglecting this results become CAM-B3LYP 465 cm-1, ωB97XD 475 cm−1.
After removal of Qx using full-quantum spectral simulations (Reimers et al., 2013).
Ligand is water (Reimers et al., 2014).
From hole-burning (HB) data, but qualitatively unreliable owing to baseline uncertainties (Reimers et al., 2013).
After approximate removal of Qx band using the bandshape deduced in wet ether (Reimers et al., 2013).