TABLE 3.

Distribution of SNPs and SilicoDArT on individual chromosomes of P. vulgaris.

Chrm	Imputed markersε				Total of markers				Chr size (kb)*	Average no. of total markers/Mb
	SNP_ DArT	SNP_ CaptSeq	DArT	Total	SNP_ DArT	SNP_ CaptSeq	DArT	Total
1	515	291	255	1,061	1,066	914	1,072	3,052	52,183.5	58.49
2	610	286	312	1,208	1,388	956	1,426	3,770	49,033.7	76.89
3	539	265	318	1,122	1,190	909	1,340	3,439	52,218.6	65.86
4	488	345	395	1,228	828	1,471	1,015	3,314	45,793.2	72.37
5	353	186	197	736	790	785	847	2,422	40,237.5	60.19
6	472	198	215	885	980	808	948	2,736	31,973.2	85.57
7	459	273	267	999	1,057	953	1,097	3,107	51,698.4	60.10
8	831	574	484	1,889	1,317	2,005	1,468	4,790	59,634.6	80.32
9	363	179	180	722	1,065	786	1,016	2,867	37,399.6	76.66
10	369	244	242	855	829	827	912	2,568	43,213.2	59.43
11	492	325	348	1,165	1,121	1,470	1,288	3,879	50,203.6	77.27
Scaffolds	—	—	—	—	231	105	193	529	—	—
Total	5,491	3,166	3,213	11,870	11,862	11,989	12,622	36,473	513,589.1	71.02

^εMAF ≥ 0.05; call rate > 95%. *Schmutz et al. (2014). Chrm., chromosome; CaptSeq, CaptureSeq.