TABLE 4.
Results of the identification of recombination events among 92 PCV2 genomes isolated from the southern China using the RDP, MaxChi, GeneConv, BootScan, SiScan, 3Seq and Chimaera algorithms, respectively
| Event number | Recombinant/genotype | Major parent/genotype | Minor parent/genotype | Detection methods | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| R | G | B | M | C | S | T | ||||
| 1 | MH465421/PCV2b | MH465460/PCV2d | MH465423/PCV2b | − | + | + | + | + | + | + |
| 2 | MH465420/PCV2b | MH465458/PCV2d | MH465418/PCV2b | + | − | − | + | − | + | + |
| 3 | MH465468/PCV2d | MH465398/PCV2b | MH465460/PCV2d | + | + | + | + | + | + | + |
| 4 | EF493839/PCV2b | MH465473/PCV2h | MH465399/PCV2b | − | − | + | + | + | + | + |
| 5 | MH465473/PCV2h | EF675238/PCV2b | MH465430/PCV2b | − | − | − | + | − | + | + |