Table 1.
GC content of CDS across 8 Citrus Species
Citrus Species | Variety | Genes | GC% | GC1% | GC2% | GC3% | GC3 s% | ENC |
---|---|---|---|---|---|---|---|---|
Atlantia buxifolia | Atalantia | 59755 | 43.51 | 50.70 | 40.47 | 39.35 | 37.08 | 52.48 |
Fortunella hindsii | Mandarin | 48789 | 43.80 | 50.85 | 40.53 | 40.01 | 37.74 | 52.47 |
Citrus grandis | Pummelo | 38039 | 43.79 | 50.67 | 40.56 | 40.13 | 37.87 | 52.55 |
Citrus sinensis | Sweet | 40773 | 43.50 | 50.52 | 40.12 | 39.87 | 37.59 | 52.44 |
Citrus medica | Citron | 40808 | 43.70 | 50.63 | 40.49 | 39.98 | 37.70 | 52.63 |
Citrus reticulata ‘Mangshan’ | Mandarin | 36852 | 43.59 | 50.51 | 40.32 | 39.94 | 37.66 | 52.65 |
Citrus ichangensis | Papeda | 36936 | 43.77 | 50.58 | 40.54 | 40.20 | 37.93 | 52.59 |
Citrus clementina | Mandarin | 29687 | 43.73 | 50.57 | 40.35 | 40.28 | 38.02 | 52.83 |
Average | - | 41455 | 43.67 | 50.63 | 40.42 | 39.97 | 37.70 | 52.58 |
Genes represents the number of sequences after filtering; GC1, GC2 and GC3 represent the GC content of the first, second, third base of codon; GC3s represents the GC content of the third synonymous position; ENC represents the effective number of codons