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. 2020 Jul 13;37(12):3439–3452. doi: 10.1093/molbev/msaa173

Table 1.

Details of Infection Phenotype-Associated Polymorphisms within Pcl7.

Nucleotide Position Base: Infectious Base: Noninfectious Amino Acid: Infectious Amino Acid: Noninfectious
678 T (one G exception: P37+) C/G G (synonymous) G (synonymous)
689 A (one G exception: P37+) G/T Y (one W exception: P37+) G/F/W
690 T (one G exception: P37+) G/C
691 T G (one T exception: P1032−) S (one A exception: P37+) A/V (one S exception: P1032−)
693 G A
691 G T/C A/E Y/H
695 C (one A exception: P37+) A
696 A T
702 T (one A exception: P37+) A G (synonymous) G (synonymous)
703 G A G/V S
705 A (one C exception: P37+) T/C
707 G (one C exception: P37+) A/C G/A E/S
708 T (one A exception: P37+) A
710 C G/T A/T G/V
713 G (one T exception: P37+) C/T G/F A/V
714 A (one C exception: P37+) C
716 C (one A exception: P37+) A A (one Y exception: P37+) Y/E
728 C T A V
829 G (one T exception: P1006+) T A (one S exception: P1006+) L/S
832 T C/G S P/G/A
841 G (one C exception: P37+) C G (one L exception: P37+) L/R

Note: Nucleotide and corresponding amino acid positions are based on translation-based alignment (supplementary fig. 2, supplementary material online). Gray shading indicates positions where infection phenotype is not perfectly correlated with nucleotide sequence, protein sequence, or both.