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. 2020 Jul 18;37(12):3507–3524. doi: 10.1093/molbev/msaa185

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© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 3. — Feature of SVs associated with domestication. (A) The genetic load of SVs for rufipogon, japonica, and indica. The selfing cultivars have a higher recessive (homozygous) load and correspondingly larger total SV burden, suggesting a cost of domestication. (B) Manhattan plots of F_ST values between rufipogon, based on SVs within 20-kb windows, with japonica on the left and indica on the right. The corresponding Manhattan plots for SNPs are provided in supplementary figure S10, Supplementary Material online. (C) Manhattan plots of CLR values for japonica (left) and indica (right), based on SVs within 20-kb windows. The corresponding Manhattan plots for SNPs are provided in supplementary figure S12, Supplementary Material online. The proportion of different types of SVs under the selective sweeps detected by F_ST (D) and SweeD (E) analyses.