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. 2020 Jul 18;37(12):3507–3524. doi: 10.1093/molbev/msaa185

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© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 5. — Two example regions of complex SVs across Oryza taxa. (A) A segmental tandem duplication of an NBS-LRR-encoding gene (LOC_Os01g05600/Os01g0149350) that was found to be gained in indica and japonica relative to rufipogon. The synteny map is shown for a region corresponding to a 35-kb region in japonica (Nipponbare). (B) Gene and TE copy number variation in a 100-kb region of chromosome 9 that includes the Sub1A gene, which confers flooding tolerance. Both an indica accession and O. longistaminata contain three copies of genes. For both (A) and (B), gene copies are tracked by dotted red lines.