Table 2.
Previously Identified Putative Domestication or Improvement Genes with Their ID, Function, and % Ranking in FST Windows.
| Locus | Gene ID (MSU7/IRGSP1.0) | Function |
F
ST (i–r) |
F
ST (j–r) |
||
|---|---|---|---|---|---|---|
| SNPs | SVs | SNPs | SVs | |||
| Sh4 | LOC_Os04g57530/Os04g0670900 | Shattering | 0.18 | 17.05 | 5.08 | 81.02 |
| qSW5 | LOC_Os05g09520/Os05g0187500 | Grain width | 97.09 | 1.44 | 84.78 | 68 |
| qSH1 | LOC_Os01g62920/Os01g0848400 | Shattering | 58.21 | 94.51 | 5.06 | 96.65 |
| Sd1 | LOC_Os01g66100/Os01g0883800 | Semidwarfing | 31.78 | 51.96 | 5.64 | 5.99 |
| Wx | LOC_Os06g04200/Os06g0133000 | Grain quality | 32.07 | 42.17 | 27.02 | 58.23 |
| Badh2.1 | LOC_Os04g39020/Os04g0464200 | Flavor or fragrance | 84.57 | 70.14 | 7.46 | 64.06 |
| Rc | LOC_Os07g11020/Os07g0211500 | Red pericarp | 47.21 | 52.79 | 7.01 | 55.86 |
| Bh4 | LOC_Os04g38660/Os04g0460200, LOC_Os04g38670/Os04g0460200, LOC_Os04g38680/Os04g0460300 | Hull color | 3.18 | 0.95 | 6.51 | 4.67 |
| PROG1 | LOC_Os07g05900/Os07g0153600 | Tiller angle | 1.79 | 2.16 | 14.18 | 6.17 |
| OsCl | LOC_Os06g10350/Os06g0205100 | Leaf sheath color | 26.58 | 75.83 | 14.01 | 73.61 |
| TAC1 | LOC_Os09g35980/Os09g0529300 | Tiller angle | 77.05 | 31.3 | 0.85 | 54.12 |
| Dwarf4 | LOC_Os03g12660/Os03g0227700 | Leaf architecture | 9.2 | 80.98 | 1.53 | 0.35 |
| SAG13 | LOC_Os03g16230/Os03g0269100 | Senescence | 48.3 | 47.08 | 30.39 | 0.56 |
| TB1 | LOC_Os03g49880/Os03g0706500 | Tillering | 2.22 | 81.45 | 5.23 | 78.2 |
| Sh1 | LOC_Os03g44710/Os03g0650000 | Shattering | 0.8 | 4.46 | 23.75 | 18.3 |