Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Nov 13;70(1):1–13. doi: 10.1093/sysbio/syaa074

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercialre-use, please contact journals.permissions@oup.com

PMC Copyright notice

Figure 2. — Phylogeny and genetic clustering of coca varieties and wild relatives. a) ASTRAL-III summary (AST) tree topology with branch lengths optimized using the ML-SNP data set; scale indicates substitutions per site and branch support values denote concordance factors of SNPs; collapsed clades are marked with the number of samples; tip names indicate taxon, sample ID, and geographic provenance indicated by the two letter country code and political subdivision. Probability assignment of individuals to five or nine genetic clusters are indicated in bar plots along with the population assignment of ‘pure’ individuals for species trees and population genetic statistics. b) SVDquartets species tree inferred from SNP data with bootstrap support. c) ASTRAL-III species tree inferred from 424 gene trees with local posterior probability (LPP) and percent quartet support, respectively; branch lengths scaled by coalescent units. d) Constrained ASTRAL-III species trees indicating LPP and percent quartet support for an E. cataractarum Trujillo/Colombian clade or a Huánuco gracilipes1 clade.

Inline graphic — Phylogeny and genetic clustering of coca varieties and wild relatives. a) ASTRAL-III summary (AST) tree topology with branch lengths optimized using the ML-SNP data set; scale indicates substitutions per site and branch support values denote concordance factors of SNPs; collapsed clades are marked with the number of samples; tip names indicate taxon, sample ID, and geographic provenance indicated by the two letter country code and political subdivision. Probability assignment of individuals to five or nine genetic clusters are indicated in bar plots along with the population assignment of ‘pure’ individuals for species trees and population genetic statistics. b) SVDquartets species tree inferred from SNP data with bootstrap support. c) ASTRAL-III species tree inferred from 424 gene trees with local posterior probability (LPP) and percent quartet support, respectively; branch lengths scaled by coalescent units. d) Constrained ASTRAL-III species trees indicating LPP and percent quartet support for an E. cataractarum Trujillo/Colombian clade or a Huánuco gracilipes1 clade.