Table 1. The genetic repertoire of prophages in Data Set 1 and Data Set 2.
Number of prophages containing a gene of this type | ||||||
---|---|---|---|---|---|---|
Gene | Count in Data Set 1 | Count in Data Set 2 | ||||
Intact | Questionable | Incomplete | Intact | Questionable | Incomplete | |
terminase | 317 | 25 | 14 | 292 | 53 | 58 |
portal | 277 | 9 | 3 | 283 | 67 | 48 |
head | 299 | 16 | 25 | 281 | 79 | 86 |
injection | 14 | 0 | 2 | 4 | 0 | 0 |
tail | 413 | 46 | 86 | 419 | 116 | 141 |
protease | 82 | 3 | 5 | 72 | 12 | 22 |
transposase | 195 | 32 | 75 | 190 | 173 | 144 |
integrase | 346 | 54 | 85 | 312 | 94 | 165 |
lysis | 226 | 19 | 11 | 52 | 6 | 6 |
plate | 121 | 5 | 0 | 143 | 20 | 28 |
capsid | 225 | 14 | 18 | 233 | 50 | 40 |
lysin | 235 | 17 | 19 | 165 | 32 | 22 |
flippase | 2 | 0 | 20 | 0 | 1 | 4 |
Total | 2752 | 240 | 363 | 2446 | 603 | 764 |