TABLE 2.
Template protein strictures used in the modeling exercise.
A15_B |
A15_E |
|||||||||
SN | PDB-Id | Iden1 | Iden2 | Cov | N Z-score | PDB-Id | Iden1 | Iden2 | Cov | N Z-score |
1 | 2la2A | 0.59 | 0.5 | 0.94 | 1.75 | 1rimA | 0.28 | 0.28 | 1 | 1.66 |
2 | 6g65A | 0.28 | 0.28 | 1 | 1.1 | 6mzcE | 0.17 | 0.22 | 1 | 1.09 |
3 | 6cfz | 0.45 | 0.28 | 0.61 | 1.02 | 1rimA | 0.28 | 0.28 | 1 | 1.51 |
4 | 1tf3A | 0.35 | 0.33 | 0.94 | 2.09 | 2la2 | 0.35 | 0.5 | 0.94 | 1.04 |
5 | 2kfqA | 0.22 | 0.28 | 1 | 1.62 | 3bzlA | 0.07 | 0.06 | 0.83 | 1.64 |
6 | 1rimA | 0.24 | 0.22 | 0.94 | 1.07 | 2la2A | 0.33 | 0.5 | 1 | 1.59 |
7 | 3jqhA | 0.11 | 0.11 | 1 | 1.77 | 3t8sA | 0.22 | 0.33 | 1 | 1.01 |
8 | 2jpkA | 0.33 | 0.33 | 1 | 1.6 | 2pq4B | 0.33 | 0.33 | 1 | 1.31 |
9 | 1p7aA | 0.18 | 0.28 | 0.94 | 1.01 | 1be3K | 0.22 | 0.28 | 1 | 1.56 |
10 | 1jlzA | 0.39 | 0.39 | 1 | 1.74 | 2juiA | 0.33 | 0.33 | 1 | 1.58 |
Iden1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence. Iden2 is the percentage sequence identity of the whole template chains with query sequence. Cov represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein. N Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.