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. 2020 Dec 3;8:604041. doi: 10.3389/fbioe.2020.604041

TABLE 5.

Antimicrobial target proteins used in the docking exercise.

Protein name PDB Id Classification Organism Method
C-1027 1hzl Antibiotic Streptomyces globisporus Solution NMR
Tyrosine aminomutase 3kdy Lyase Streptomyces globisporus X-ray diffraction
50s ribosomal protein l32 6qul Antibiotic Escherichia coli Electron microscopy
Carbapenam synthetase 1q15 Biosynthetic protein Pectobacterium carotovorum X-ray diffraction
Iron(3 +)-hydroxamate-binding protein fhud 1esz Metal transport Escherichia coli X-ray diffraction
Fhua 1by3 Membrane protein Escherichia coli X-ray diffraction
Neocarzinostatin 1nco Antibacterial and antitumor protein Streptomyces carzinostaticus X-ray diffraction
Protein phzg 1ty9 Oxidoreductase Pseudomonas fluorescens X-ray diffraction
Lipocalins 1nyc Hydrolase inhibitor Escherichia coli X-ray diffraction
D-alanyl-d-alanine carboxypeptidase 6osu Hydrolase Francisella tularensis subsp. Tularensis schu s4 X-ray diffraction
Beta-hexosaminidase 4g6c Hydrolase Burkholderia cenocepacia j2315 X-ray diffraction
Mexa of the multidrug transporter 1vf7 Membrane protein Pseudomonas aeruginosa X-ray diffraction
S/t protein kinase pkng 4y0x Transferase Mycobacterium tuberculosis h37rv X-ray diffraction
Bacterial 45srbga ribosomal particle class a 6pvk Ribosome Bacillus subtilis Electron microscopy
Neocarzinostatin 1nco Antibacterial and antitumor protein Streptomyces carzinostaticus X-ray diffraction
Carbapenam 4oj8 Oxidoreductase Pectobacterium carotovorum subsp. Carotovorum X-ray diffraction
Vancosaminyl transferase 1rrv Transferase/antibiotic Amycolatopsis orientalis X-ray diffraction