Figure 6.
Genome-wide Mapping of SNPs Associated with Different Yield-Related Traits in Accessions from Mini-Core CC3.
Manhattan (left) and Q–Q (right) plots of compressed MLM for (A) grain length, (B) grain width, (C) endosperm type, (D) seed coat color, and (E) secondary branching. Negative log10-transformed P values (y axis) from the compressed MLM are plotted against the positions of SNPs (x axis) on different chromosomes. The green line in each figure represents the genome-wide cutoff for significant association. Red and blue lines in the Q–Q plot represent the trajectory for the null hypothesis and the observed values, respectively.