Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference |
Identifiers | Additional information |
|---|---|---|---|---|
| Antibody | Rabbit polyclonal anti-5-HT | MilliporeSigma | Cat# S5545; RRID:AB_477522 | (1:1000) |
| Antibody | Chicken polyclonal anti-GFP | Aves Laboratory | Cat# GFP-1020, RRID:AB_10000240 | (1:1000) |
| Antibody | Rabbit polyclonal anti-DsRed | Takara Bio | Cat# 632496, RRID:AB_10013483 | (1:1000) |
| Antibody | Rabbit polyclonal anti-tagRFP | Evrogen | Cat# AB233, RRID:AB_2571743 | (1:200) |
| Antibody | Goat polyclonal anti-Chicken IgY (H+L) Secondary Antibody, Alexa Fluor 488 | ThermoFisher Sci. | Cat# A-11039; RRID:AB_2534096 |
(1:500) |
| Antibody | Goat polyclonal anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 568 | ThermoFisher Sci. | Cat# A-11011; RRID:AB_143157 |
(1:500) |
| Antibody | Goat polyclonal anti-Rat IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 | ThermoFisher Sci. | Cat# A-11006, RRID:AB_2534074 | (1:500) |
| Chemical compound, drug | Metronidazole | MP Biomedicals | Cat# 0215571080 | |
| Strain, strain background (Danio rerio) | npvf ct845 mutant | Lee et al., 2017 | RRID:ZDB-ALT-170927-1 | |
| Strain, strain background (Danio rerio) | tph2 ct817 mutant | Chen et al., 2013a | RRID:ZDB-ALT-131122-14 | |
| Strain, strain background (Danio rerio) | Tg(npvf:eGFP) ct847Tg | Lee et al., 2017 | RRID:ZDB-ALT-170927-3 | |
| Strain, strain background (Danio rerio) | Tg(npvf:GCaMP6s-P2A-tdTomato) ct872Tg | Lee et al., 2019 | ZFIN: ZDB-ALT-190725–5 | |
| Strain, strain background (Danio rerio) | Tg(npvf:ReaChR-mCitrine) ct849Tg | Lee et al., 2017 | RRID:ZDB-ALT-170927-5 | |
| Strain, strain background (Danio rerio) | Tg(npvf:kalta4) ct848Tg | Lee et al., 2017 | RRID:ZDB-ALT-170927-4 | |
| Strain, strain background (Danio rerio) | Zebrafish: Tg(tph2:eNTR-mYFP) ct866Tg | Oikonomou et al., 2019 | RRID:ZDB-ALT-190508-3 | |
| Strain, strain background (Danio rerio) | Tg(tph2:GCaMP6s-P2A-NLS:tdTomato) ct874 | This study; Figure 2 and Figure 2—figure supplements 3 and 4. | ZFIN: ZDB-ALT-200512–2 | GCaMP6s-P2A-NLS:tdTomato expressed under the tph2 promoter; – Prober Lab |
| Strain, strain background (Danio rerio) | Tg(UAS:nfsb-mCherry) rw0144Tg | Agetsuma et al., 2010 | RRID:ZDB-ALT-110215-7 | |
| Strain, strain background (Danio rerio) | Tg(UAS:TRPV1-tagRFP-T) ct851Tg | Lee et al., 2017 | RRID:ZDB-ALT-170927-7 | |
| Sequence-based reagent | Primer: tph2 mutant genotyping primer 1: AGAACTTACAAAACTCTATCCAACTC | Oikonomou et al., 2019 | ||
| Sequence-based reagent | Primer: tph2 mutant genotyping primer 2: AGAGAGGACAACATCTGGGG | Oikonomou et al., 2019 | ||
| Sequence-based reagent | Primer: tph2 mutant genotyping primer 3: TAATCATGCAGTCCGTTAATACTC | Oikonomou et al., 2019 | ||
| Sequence-based reagent | Primer: npvf mutant genotyping primer 1: CAGTGGTGGTGCGAGTTCT | Lee et al., 2017 | ||
| Sequence-based reagent | Primer: npvf mutant genotyping primer 2: GCTGAGGGAGGTTGATGGTA | Lee et al., 2017 | ||
| Sequence-based reagent | Primer: Tg(npvf:ReaChR-mCitrine) genotyping primer 1: CACGAGAGAATGCTGTTCCA | Lee et al., 2017 | ||
| Sequence-based reagent | Primer: Tg(npvf:ReaChR-mCitrine) genotyping primer 2: CCATGGTGCGTTTGCTATAA | Lee et al., 2017 | ||
| Sequence-based reagent | Primer: Tg(UAS:TRPV1-tagRFP-T) genotyping primer 1: CAGCCTCACTTTGAGCTCCT: | Lee et al., 2017 | ||
| Sequence-based reagent | Primer: Tg(UAS:TRPV1-tagRFP-T) genotyping primer 2: TCCTCATAAGGGCAGTCCAG | Lee et al., 2017 | ||
| Software, algorithm | MATLAB R2017b | Mathworks | RRID:SCR_001622 | |
| Software, algorithm | Prism6 | GraphPad | RRID:SCR_002798 | |
| Software, algorithm | Image J/Fiji | Schneider et al., 2012 | RRID:SCR_002285 | |
| Other | 96-well plate | GE Healthcare Life Sciences | Cat#: 7701–1651 | |
| Other | MicroAmp Optical Adhesive Film | Thermo Fisher Scientific | Cat#: 4311971 |