Table 1.
Primer | Sequence | Tm (°C) | GC (%) | PCR product size | Location with respect to TSS | Location with respect to ATG | ||
---|---|---|---|---|---|---|---|---|
ESR2 promoter 0N | →PCR | GGTATTTTTTAGGATTTGGTTGGAAATGTA | 30 | 60,9 | 30,0 | 276 bp | − 239 | − 11,663 |
←PCRB | ACTTAACCATAAACCCCTTCTTCCTTT | 27 | 58,9 | 37,0 | + 37 | − 11,387 | ||
SEQ | ATATTTTTAGGTTTTATTTTAGAT | 24 | 40,7 | 12,5 | – | − 209 | − 11,633 | |
ESR2 exon 0N | →PCR | GGAGGTTGAGAGAAATAATTGTTTTTTGA | 29 | 57,7 | 31,0 | 253 bp | + 115 | − 11,309 |
←PCRB | AAACACACCCACCTTACCTTCTCTA | 25 | 58,3 | 44,0 | + 368 | − 11,057 | ||
SEQ | GTTTTTTGAAATTTGTAGGG | 20 | 44,8 | 30,0 | – | + 135 | − 11,289 |
→PCR, forward primer; ←PCR, reverse primer; B, biotinylated primer; Tm, melting temperature, GC, guanine-cytosine content; bp, base pairs; TSS, transcription start site; ATG, start codon; SEQ, sequencing primer.