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. 2020 Dec 7;11:579411. doi: 10.3389/fgene.2020.579411

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Copyright © 2020 Holmes, Green, Oldfield, Turner and Bayliss.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Neighbor-net phylogenetic tree of 54 MenW ST-11 meningococcal genomes obtained over one academic year from students within the University of Nottingham. Isolates were obtained at three time points: September (n = 5), November (n = 24), and March (n = 25). Phylogenetic trees were derived using the PubMLST N. meningitidis cgMLST v1.0 scheme. Nodes are color coded based on a classification of an individual isolate into 1 of 7 clusters or no cluster. The scale denotes the number of loci with a variant allele sequence. The same tree is shown as an inset with the isolates color-coded for time of isolation:- blue, September; red, November; green, March.