Table 1.
Comprehensive table of R. acetosa satellites with estimation of distribution and abundance on X and Y chromosomes and autosomes. Newly described repeats are indicated. Estimation was based on the RepeatExplorer comparative analysis results
| Satellite sequences | |||||
|---|---|---|---|---|---|
| Repeat name | FISH location | Reference | Proportion on chromosomes (%) | ||
| A | X | Y | |||
| RAE180 | Mostly on Y | Shibata et al. (2000) | 1.68 | 0.23 | 2.94 |
| RAYSI | Y specific | Shibata et al. (1999) | 0.08 | 0.05 | 1.39 |
| RAYSII | Y specific | Mariotti et al. (2009) | 0.01 | 0.01 | 0.03 |
| RAYSIII | Y specific | Mariotti et al. (2009) | 0.07 | 0.01 | 0.20 |
| RA160 | Y, X and 2 A | Steflova et al. (2013) | 0.11 | 0.00 | 0.01 |
| RA690 | Y, X and 2 A | Steflova et al. (2013) | 0.23 | 0.14 | 1.24 |
| RAE730 | Y and 1 A | Shibata et al. (2000) | 0.08 | 0.02 | 0.46 |
| Novel satellite sequences | |||||
| Repeat name | FISH location | Putative monomer length (bp) | Proportion on chromosomes (%) | ||
| A | X | Y | |||
| RAE173 | Mostly on Y | 173 | 0.09 | 0.17 | 4.51 |
| RAE244 | Mostly on Y | 244 | 0.01 | 0.00 | 0.09 |
| RAYSIV | Y-specific | 175 | 0.01 | 0.01 | 0.26 |
| RAYSV | Y1-specific | 468 | 0.01 | 0.00 | 0.03 |
| RAYSVI | Y-specific | 445 | 0.02 | 0.01 | 0.22 |
| RAYSVII | Y1-specific | 164 | 0.00 | 0.00 | 0.21 |